Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01276 ATGCGCGATACACAGTGCTTCCAAATGATGGAGAGGACGATCAAGGAGCATCAAGAGGAAAGAAAGAAGAGAAAGGAAGTGGGAAGTGGAAGAGATGATGATCATATCAAGGATCTACTTGATGTGTTATTGGACATACATGAAGATGAGAACTCTGACATAAAATTGACAAAAGAGAACATAAAGGACGTATTTATGACAGGAACAGACATTGCGGCCTTGACAATCGTATGGGCTCTGGCTGATAGATTAGTAGAAGAATCAGACCTTGTCAACCTTCCTTACCTACAAGCTATAGTCAAAGAAACGCTAAGGATTCACCCCACAGGTCCATTGATTGTTAGAGAATCGTCTGAAAGCTGCAATATCTGGGGCTATGAGATTCCACCAAAGACTCAGTTTAGGGATCCCAACCACTGGGAGAACCCACTTGAGTTTAGACCAGAGAGGGGACAATATTTTCATCTGATTCCGTTTGGGAGTGGAAGAAGAGGTTGTCCTGGAACCTCACTGGCTTTGCAGGTTGTACAGACGAACCTTGCTGCTATGATTCAGTGCTTTCAATGGAAGGTTAAAGGAGAAAATGAGACTGTTGACATGGAAGAGAAACCTGGGTCAACTTGCTGTAGCCTCACTTCTGACCATTATGGCGGTTCTCAGTATGGCATTTCAACTGTCACTCATTTGTTTGATCTCCACCATCGTGATTGCATTCATACTATGGAGAAAACAAAAGAAGACCCTCCTTCCACCAAGTCCAATGGCCCTCCCCCATCATTGGTCACCTACACCTTCTCTCCACAATACCTCACCGAGATTTTCACAAGCTCTCAATCCGTTATGGACCCATCATGCACCTTTTCCTCGGTTCAGTCCTTTGTGTGGTGGCTTCAACCGCAGAAGCGGCCAAAGATTTCCTCAAAACTCACGAATCCTCCTTCTCCAACCGCATTGCTCAAACCGTCGCCATTGAGGCCTTAA 981 0.4506 MRDTQCFQMMERTIKEHQEERKKRKEVGSGRDDDHIKDLLDVLLDIHEDENSDIKLTKENIKDVFMTGTDIAALTIVWALADRLVEESDLVNLPYLQAIVKETLRIHPTGPLIVRESSESCNIWGYEIPPKTQFRDPNHWENPLEFRPERGQYFHLIPFGSGRRGCPGTSLALQVVQTNLAAMIQCFQWKVKGENETVDMEEKPGSTCCSLTSDHYGGSQYGISTVTHLFDLHHRDCIHTMEKTKEDPPSTKSNGPPPSLVTYTFSPQYLTEIFTSSQSVMDPSCTFSSVQSFVWWLQPQKRPKISSKLTNPPSPTALLKPSPLRP 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01276 326 PRINTS E-class P450 group I signature 156 166 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01276 326 PRINTS E-class P450 group I signature 97 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01276 326 PRINTS E-class P450 group I signature 56 73 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01276 326 PRINTS E-class P450 group I signature 166 189 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01276 326 PRINTS P450 superfamily signature 157 166 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01276 326 PRINTS P450 superfamily signature 166 177 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01276 326 PRINTS P450 superfamily signature 67 84 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01276 326 PRINTS P450 superfamily signature 98 109 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01276 326 MobiDBLite consensus disorder prediction 304 326 - -
Vimu4g01276 326 SUPERFAMILY Cytochrome P450 7 209 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01276 326 Gene3D Cytochrome P450 1 208 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu4g01276 326 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 8 208 - -
Vimu4g01276 326 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 159 168 IPR017972 GO:0005506|GO:0016705
Vimu4g01276 326 Pfam Cytochrome P450 83 205 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01276 Vimu-Chr4 12175393 12176813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01276 9 207 Cytochrome P450 AT5G06900 43.333 4.55e-56 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01276 K24188 - pvu:PHAVU_001G138900g 325.094