Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01273 ATGGTGGGAACACCTATTAACGGAAGAACAAGGCCATCTTATGGTGTTGTAAATGGTGGCCATGATCTTGGCCCCAGCAGTGCTCCACCAAGCAATGCTGGTTCAGATTATGGCGTTATAGAGTTCACCAGGGAGGATGTGGAGGCCCTGCTGAATGAAAAGGCCAAAAGGAAAGACAGATTTAATTATAAGGAAAGATGTGAAAATATGATGGATTACATAAAAAGGCTAAAGCTTTGCATCAGGTGGTTCCAAGACCTTGAGATTACCTACTCACTAGAACAAGAAAAATTGAAGAGTTCATTGGAATTAGCTCAGCAAAGATGCATGGAGATAGAGTTGTTACTCAAAATCAAGGAAGATGAACTAAACTCAATTATTGTTGAAATGAGACGGAATTGCACTTCTTTACAGGAGAAATTAGTGAAGGAAGAATCAGAGAAAACAGCAGCAGCAGAATCTCTTGTTAAGGAGAGAGAGGCAAGGCTTAACTTTGAGAGGTCGCAGAATACACTTCAGGAAGATCTTGGAAGAGCACAACGGGATCTTCAAAGTGCGAATCAGAAGATATCATCACTGAATGACATGTATAAGCGGTTACAAGATTACATAACCAGCTTGCAGCAGTATAATGGAAAACTTCATTCAGAGCTTTCTACAGTTGAAACTGAACTTAAGCGTGTGGAGAAAGAGAAAGCTGCTGTAGTGGAGAACCTTACTATGTTAAAGGGCCAGCTTACTTTGTCTATGTCTTCTCAAGAAGAGGCCACAAAACAGAAGGATGCCTTGGCCAGTGAAGTTGGATCACTTCGTGTTGAGCTGCAACAAGTGAGGGATGAACGGGACCGCCAACTATCTCAAGTGCAAACTTTGACTACTGAATTAGAGAAGTCGAAAGATTCTACAGAGAAGTCCTGCTCCGAATTGAACAACTTGACAATAAGAACAAATGAACTGGAGGCAAAATGTGCTTTGCAAGATGAGCGGATAAAGGTGCTGCAAGAGAAGCTCACCACTGCAGAGGAGAAACTGCAGGTTTCTGATATGTCTGCAAATGAGACAAGAACAGAATTTGAAGGGCAACAAAAGCTTGTACATGAGTTGCAAAGGCGTTTGGAAGATGCAGAATATAAAGTTATAGTAGGGGAGAAATTGAGGAAAGAATTGCACAATACAATTTTGGAACTGAAAGGGAACATCCGTGTGTTCTGCAGAGTGCGGCCTTTGTTACCTGATGAGGCTTGTAGCGCAGAAGGAAAGGTTATATCTTATCCCACATCGATGGAAGCTTCTGGACGGGGCATCGAATTGACACAAAGTGGCCAAAAACATTCATTCACATTTGATAAAGTTTTTGCACCTGATGCGTTACAAGAGGAAGTTTTTATTGAAATTTCACAGCTTGTGCAGAGTGCTCTTGATGGTTATAAGGTTTGTATTTTTGCCTATGGTCAGACAGGATCAGGGAAAACTTATACAATGATGGGCAGGCCTGGACATCCAGAAGAGAAGGGCTTGATCCCTCGTTCGCTAGAACAAATATTTCAAGCAAAACAGTCTCAGAAACCACAGGGCTGGAAATATGAAATGCAGGTGTCTATGTTGGAAATATACAATGAAACCATTCGTGATTTGTTATCTACAAATAAGTCATCATCTGATGGAACACCAACACGTGTGGAAAATGGTACTCCTGGGAAGCAATACTCCATCAAACATGACGCCAATGGAAATACACATGTTTCTGATCTAACGGTAGTGGATGTTCAGAGTGTAAAAGAGGTTGCATTTCTTTTAAGTCAAGCTGCTAACAGCAGATCTGTGGGCAAAACTCAGATGAATGAACAATCTTCTAGAAGTCATTTTGTATTCACTCTTCGAATCTATGGTGTGAATGAGAGCACTGATCAACAAGTACAAGGCATTCTAAATCTCATTGATCTTGCTGGAAGTGAGCGTCTTTCGAGGAGTGGGTCAACGGGGGACCGATTGAAAGAAACTCAAGCAATAAATAAAAGTCTGTCATCATTGAGTGATGTCATATTTGCCTTGGCCAAGAAGGAGGATCATATCCCATTCAGGAACTCAAAGCTAACATACCTACTTCAGCCTTGTCTTGGTGGAGACTCAAAAACATTGATGTTTGTCAACATCTCTCCTGACCAAGCTTCAGCAGGAGAGTCACTATGCTCACTCCGGTTTGCATCAAGAGTTAATGCATGTGAAATTGGAACACCACGCCGTCACACCAATGGACGCCCTATAGAATCTCGCTTGACCTATTTCTAA 2289 0.4168 MVGTPINGRTRPSYGVVNGGHDLGPSSAPPSNAGSDYGVIEFTREDVEALLNEKAKRKDRFNYKERCENMMDYIKRLKLCIRWFQDLEITYSLEQEKLKSSLELAQQRCMEIELLLKIKEDELNSIIVEMRRNCTSLQEKLVKEESEKTAAAESLVKEREARLNFERSQNTLQEDLGRAQRDLQSANQKISSLNDMYKRLQDYITSLQQYNGKLHSELSTVETELKRVEKEKAAVVENLTMLKGQLTLSMSSQEEATKQKDALASEVGSLRVELQQVRDERDRQLSQVQTLTTELEKSKDSTEKSCSELNNLTIRTNELEAKCALQDERIKVLQEKLTTAEEKLQVSDMSANETRTEFEGQQKLVHELQRRLEDAEYKVIVGEKLRKELHNTILELKGNIRVFCRVRPLLPDEACSAEGKVISYPTSMEASGRGIELTQSGQKHSFTFDKVFAPDALQEEVFIEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPGHPEEKGLIPRSLEQIFQAKQSQKPQGWKYEMQVSMLEIYNETIRDLLSTNKSSSDGTPTRVENGTPGKQYSIKHDANGNTHVSDLTVVDVQSVKEVAFLLSQAANSRSVGKTQMNEQSSRSHFVFTLRIYGVNESTDQQVQGILNLIDLAGSERLSRSGSTGDRLKETQAINKSLSSLSDVIFALAKKEDHIPFRNSKLTYLLQPCLGGDSKTLMFVNISPDQASAGESLCSLRFASRVNACEIGTPRRHTNGRPIESRLTYF 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01273 762 MobiDBLite consensus disorder prediction 548 567 - -
Vimu4g01273 762 FunFam Kinesin-like protein 345 743 - -
Vimu4g01273 762 Coils Coil 169 203 - -
Vimu4g01273 762 PRINTS Kinesin heavy chain signature 475 496 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu4g01273 762 PRINTS Kinesin heavy chain signature 611 628 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu4g01273 762 PRINTS Kinesin heavy chain signature 642 660 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu4g01273 762 PRINTS Kinesin heavy chain signature 691 712 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu4g01273 762 PANTHER KINESIN-LIKE PROTEIN KLP-3 257 748 IPR027640 GO:0003777|GO:0007018
Vimu4g01273 762 MobiDBLite consensus disorder prediction 1 34 - -
Vimu4g01273 762 Coils Coil 40 60 - -
Vimu4g01273 762 ProSiteProfiles Kinesin motor domain profile. 399 741 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu4g01273 762 CDD KISc_C_terminal 397 743 - -
Vimu4g01273 762 Coils Coil 127 147 - -
Vimu4g01273 762 Gene3D Kinesin motor domain 341 743 IPR036961 -
Vimu4g01273 762 Coils Coil 211 245 - -
Vimu4g01273 762 Coils Coil 102 122 - -
Vimu4g01273 762 Coils Coil 351 378 - -
Vimu4g01273 762 Pfam Kinesin motor domain 405 739 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu4g01273 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 739 IPR027417 -
Vimu4g01273 762 Coils Coil 260 294 - -
Vimu4g01273 762 SMART kinesin_4 397 749 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vimu4g01273 762 Coils Coil 316 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01273 Vimu-Chr4 12123260 12128811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01273 312 753 Calmodulin-binding Proteins AT5G65930 35.294 6.20e-77 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01273 K10405 - gmx:100801196 1364.36