LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu4g01270	ATGAAGCAGTTTGAAATGGGTATCAAAAAGGTTATCTTTTGCAGCATTTTGGTTTTTCATGTTTTGGTCGTAGTGAGCAGTGAAGAGAAAAAAACTGAAGAAGAATTCATCAGGCAGTTATTTGATCCTACATCTGGACTATTAACTGAGGATACGGCAAAGGTATTATGGATAACTTGTTGGGAAGATTTGATTCGATTAAAGAAAGAAGTCTTATGCCTCCCAAAGGAATGTTGCAGAAACAGCAATCAAGTTAATTTTGGCTCAGTGGCCAGACAAAACATTCAACAAATGATCAATGCATGTTATCCTCAATTAAAGGAAAATGTTCTTAAGTGTTTTAGAAAACACCATTTTCCAATTCATGCTCTGAAGGAAGAGGATGCCTCTAAGATCTGGCATTCAACGTCACCTTCATCTAGAAGATATCTGGGTCAAATTTTTCCACGGCAGCTATCAGAAACAACAGCAAACAAGGAACATGAATTACATATAAGCATTAAAGTTAAAGAAGATACAAAAGCATCTGGAACTAGCATGGCAATACCTCTAGTGGTAGCAGTTGTAGCTGTGGTATTAGTCATTTTATGTTGTTATAGATTTTGTGGGAGTGGACAAGTTAGCCAAAATGATGAGAGACCCCTTCTCAGCATGAGCATGAATGACTACTCAATGAATGTTATTACAGGTTCTTCTTCGAACAATAATATTCAATTCAAAAGCTCAATGAAAAAAGAAGGAGAAATTGGTATTCAATCAGTTGTTGATGAGAAGAGAAAATCTGTGTCGTTGAATGAAAGTGAAACAGGAGAAGTTGGTAGTCGTTCTGTGAGAGCATCATTTGAACTAAAACCTCCTCCTGGGAGAGCAGCATCAAATAATGGATTGCTTCCTTTGAAACCTCCTCCTGGAAGGACTGATCTTCTTCCTCTAAAACCTCCTCCTGGAAGACCAGATCTTGCTCCTTCTCCACCTCCTCCTCCACCTACTCCACCTCCTCCACCTCCTCCACCTCCTCCATCTCCTCCTTCTACTTCTAATTCTAATTCTAATTCTAATTCTAATTCTGCACCACCACCTCCTCCTCCTCCTCGTGCACCACCAAAGCCTACCGGTGCTGGACCTCCACCTCCTCCACTTCCTGGCCGCGGCCCTGGCCCTGGCCCTAGAGCACCACCCCCTCCTCCTGGCAAAGGCCCTAGAGCTCCACCACCACCTCCATCTAGAGCCAAGGCTGGTCCTCCTGGTGCTGGTCCTAGGCCTCCTCCACCCCCAGGTGGTGGTGCAGGTCATGCAAGAGCTCCTTCCAATCCAAAGGTTGTTGAGGAAGCCAATTATGAAGGTGAAGATTATGTTCCTAAAACTAAGTTAAAGCCTTTCTTCTGGGATAAGGTTCAAGCTAACTCAGATCAAGCAATGGTATGGAATCAACTCAAAGCAGGATCCTTCCAGTTTAATGAAGAAATGATCGAGACACTTTTTGGCTTTAATGCTGCCACTACCGATAAAGGAAAGGCCCAACCAAAAAAAGAGGCTGCTGCCCAAACTCCCCAACTTATTCAAATCGTTAACGCAAAGAAAGCACAGAATTTGTCTATTCTATTAAAAGCATTAAATGTCACCGCAGATGAAGTTTGTGATGCACTTCTTGAAGGAAATGAGCTTCCCACAGAATTCCTTCAAACCTTGTTGAAGATGGCACCGACGCAGGACGAAGAACTTAAGCTTAGAGTTTTCAGTGGTAATCTAGCACAACTCTCCCCTGCAGATAGGTTCCTTAAAGCCATAGTTGACATTCCTTGTTCTTTTAAACGAATGGAAGCATTAATTTACATGGGTACTCTTCAAGAGGATCTCACCAGTACACGAGAATCCTTTGCAATTTTAGAGGTTGCTTGTAAAAAGCTGAGAAGTAGTCGATTATTCCTGAAACTTCTTGAAGCTGTTCTGAAAACTGGGAATCGCATGAACGATGGGACATTTCGTGGTGGTGCACAAGCATTCAAACTTGATACACTGTTGAAACTATCTGATGTGAAAGGAGTAGATGGCAAGACCACACTCTTGCACTTCGTTGTTCAAGAGATAGTACGCACTGAGGGCATAAGAGCAGCACGCATGGCAAAAGAGAGTCACAGTTTCTCCAGCATTAAAACAGATGACCTTCTTGAGGACATCTCGATTGAATCAGATGACCACTATCGTGAACTTGGTCTTCAAGTGGTTTCATATTTAAGCACTGAACTTGAAAGCGTTAAGAAAGCAGCAGCTTTAGATGCTGATGGTTTGGTAGGAACAACTTCAAGAGTAGGGCATGGTCTCATAAAAACAAGAGACTTTGTAAACAAAGATTTGAGCAATACGAAGGGTGATAAAGGGTTTATTGAGACAGTGAAGAGCTTCGTAGAGAAAGCTGAGGCTGATGTCAAAAGTTTGCTAGAAGAGGAGAAGAAAATCATGGGTCTGGTGAAGAGCACTGGTGATTACTTTCATGGAGATACAGGGAAGGATGAAGGGTTGAGATTATTTAACATAGTACGAGATTTCTTAGTAATGTTGGATAAGGTGTGCAAGGAGATACAACTTGCACCACCAAAGAAGCCAGCACCAAAAAGTGGAAAGCAAGAAACACCTAATCAATCTAGTGCAAAGCAAGAAACACCTAATAATCATTCTAGAAAACCTTCTTCCTCTGATAATCTTCCTCCTGCTCATGATTTAATTCGTCAAAGAATTTCTCCAGTAATTGCAAATAGGAGGACAGATGACTTTAGTTCAGATGATGACAGTCCTTAA	2796	0.4177	MKQFEMGIKKVIFCSILVFHVLVVVSSEEKKTEEEFIRQLFDPTSGLLTEDTAKVLWITCWEDLIRLKKEVLCLPKECCRNSNQVNFGSVARQNIQQMINACYPQLKENVLKCFRKHHFPIHALKEEDASKIWHSTSPSSRRYLGQIFPRQLSETTANKEHELHISIKVKEDTKASGTSMAIPLVVAVVAVVLVILCCYRFCGSGQVSQNDERPLLSMSMNDYSMNVITGSSSNNNIQFKSSMKKEGEIGIQSVVDEKRKSVSLNESETGEVGSRSVRASFELKPPPGRAASNNGLLPLKPPPGRTDLLPLKPPPGRPDLAPSPPPPPPTPPPPPPPPPPSPPSTSNSNSNSNSNSAPPPPPPPRAPPKPTGAGPPPPPLPGRGPGPGPRAPPPPPGKGPRAPPPPPSRAKAGPPGAGPRPPPPPGGGAGHARAPSNPKVVEEANYEGEDYVPKTKLKPFFWDKVQANSDQAMVWNQLKAGSFQFNEEMIETLFGFNAATTDKGKAQPKKEAAAQTPQLIQIVNAKKAQNLSILLKALNVTADEVCDALLEGNELPTEFLQTLLKMAPTQDEELKLRVFSGNLAQLSPADRFLKAIVDIPCSFKRMEALIYMGTLQEDLTSTRESFAILEVACKKLRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIVRTEGIRAARMAKESHSFSSIKTDDLLEDISIESDDHYRELGLQVVSYLSTELESVKKAAALDADGLVGTTSRVGHGLIKTRDFVNKDLSNTKGDKGFIETVKSFVEKAEADVKSLLEEEKKIMGLVKSTGDYFHGDTGKDEGLRLFNIVRDFLVMLDKVCKEIQLAPPKKPAPKSGKQETPNQSSAKQETPNNHSRKPSSSDNLPPAHDLIRQRISPVIANRRTDDFSSDDDSP	931

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu4g01270	931	PANTHER	FORMIN-RELATED	347	897	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Vimu4g01270	931	PRINTS	Proline rich extensin signature	306	327	-	-
	Vimu4g01270	931	PRINTS	Proline rich extensin signature	327	343	-	-
	Vimu4g01270	931	PRINTS	Proline rich extensin signature	356	381	-	-
	Vimu4g01270	931	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	447	879	IPR015425	-
	Vimu4g01270	931	Pfam	Formin Homology 2 Domain	449	853	IPR015425	-
	Vimu4g01270	931	SMART	it6_source	447	872	IPR015425	-
	Vimu4g01270	931	Gene3D	Formin, FH2 domain	452	894	IPR042201	-
	Vimu4g01270	931	ProSitePatterns	Serine proteases, subtilase family, serine active site.	177	187	IPR023828	-
	Vimu4g01270	931	MobiDBLite	consensus disorder prediction	873	899	-	-
	Vimu4g01270	931	MobiDBLite	consensus disorder prediction	303	345	-	-
	Vimu4g01270	931	Coils	Coil	795	815	-	-
	Vimu4g01270	931	MobiDBLite	consensus disorder prediction	355	429	-	-
	Vimu4g01270	931	MobiDBLite	consensus disorder prediction	863	931	-	-
	Vimu4g01270	931	MobiDBLite	consensus disorder prediction	260	437	-	-
	Vimu4g01270	931	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	460	861	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu4g01270	Vimu-Chr4	12106672	12110598	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu4g01270	418	922	FH2 protein (formin) Gene Family	AT5G54650	60.511	0.0	578

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu4g01270	-		-	vun:114183601	842.417