Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01265 ATGAAAGACGAGTCAACTGGGCTTATCATCGGGATTTCCATAGGTGTGGTGATTGGAGTTGCTTTGGCAATTTCTGCGTTGTTCTGTCTCAGATATCATCGGAAACGGTCACAGATAGGCAATAGCAGTTCCCGGAGAGCAGCTGCCATACCCATCCGCCAAAATGGTTTTGATTCTTGCACTATTCTATCAGACTCAACCTTGGGTCCAGAATCACCTGTGAGGTCTGGACGAAATGGCACATCCTTCTGGCTCGAGGGCTTCAAGAAGAGTAGCAACATGGTGTCAGCATCTGGAATACCAGAATATTCATACAAGGATTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGACAAGGTGCATTTGGTCCTGTTTATAAAGCTCAGATGTCTACTGGGGAGACTGTTGCAGTTAAAGTTCTCGCTACTAATTCTAAGCAAGGGGAGAAAGAATTTCATACAGAGGTGAAGATAATATTTGTTTTTTCAGTGCTTTGGTATGAGAAGAAGGTTATGCTGTTGGGAAGGTTACATCATAGGAATCTGGTGAATTTGGTCGGGTATTGTGCGGAAAAGGGGCAACACATGCTTATATATGTGTACATGAGTAAAGGCTGCTTGGCTTCCCACTTGTACAGTGAAGAGAATGGTGCTCTGGGTTGGGAATTGAGAGTTCATATAGCTTTAGACGTAGCAAGAGGAATAGAGTATCTTCATGATGGGGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCTAATATTCTCTTGGACCAGTCCATGCGAGCCAGGGTTGCTGATTTTGGACTCTCGAGAGAAGAGATGGTGGATAAACAAGCTGCAATTCGGGGTACCTTTGGCTATCTTGATCCTGAGTATATATCTTCAGGAACATTCACCAAAAAAAGTGATGTATACAGTTTTGGGGTTTTGCTGTTTGAACTTATAGCAGGCAGAAATCCTCAGCAAGGTCTAATGGAATATGTTGAGCTTGCAGCAATGAACAGTGAGGGGAAAGTTGGTTGGGAGGAGATAGTTGATTCTAAGCTTGAGGGAAAATGTGAGTTTGAAGAGGTAAATGAAGTGGCAGCCCTTGCCTACAAATGCATCAACCGTGTCCCAAAGAAACGACCTTCCATGAGGGACATTGTGCAAGTTTTGACACGAATACTGAAGTCAAGGCACCAAAGGAATCATCATCATCATCATCACGAGAAGTCACTCTCAGCCGCAGGTGATGAAGTTTCCATTGATGTTGATCAGCTAGAAACCAAGACTTCTCTCACTCACCACCACACAAGAGAAGAATCTATAGACAGCACAGCTGACATGTATGATTTGTAG 1353 0.4324 MKDESTGLIIGISIGVVIGVALAISALFCLRYHRKRSQIGNSSSRRAAAIPIRQNGFDSCTILSDSTLGPESPVRSGRNGTSFWLEGFKKSSNMVSASGIPEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATNSKQGEKEFHTEVKIIFVFSVLWYEKKVMLLGRLHHRNLVNLVGYCAEKGQHMLIYVYMSKGCLASHLYSEENGALGWELRVHIALDVARGIEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKQAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNSEGKVGWEEIVDSKLEGKCEFEEVNEVAALAYKCINRVPKKRPSMRDIVQVLTRILKSRHQRNHHHHHHEKSLSAAGDEVSIDVDQLETKTSLTHHHTREESIDSTADMYDL 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01265 450 SMART serkin_6 113 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01265 450 Pfam Protein tyrosine and serine/threonine kinase 115 390 IPR001245 GO:0004672|GO:0006468
Vimu4g01265 450 SUPERFAMILY Protein kinase-like (PK-like) 102 411 IPR011009 -
Vimu4g01265 450 Gene3D Transferase(Phosphotransferase) domain 1 204 419 - -
Vimu4g01265 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Vimu4g01265 450 CDD STKc_IRAK 119 393 - -
Vimu4g01265 450 Gene3D Phosphorylase Kinase; domain 1 83 166 - -
Vimu4g01265 450 Gene3D Phosphorylase Kinase; domain 1 167 203 - -
Vimu4g01265 450 MobiDBLite consensus disorder prediction 427 444 - -
Vimu4g01265 450 MobiDBLite consensus disorder prediction 427 450 - -
Vimu4g01265 450 PANTHER OS01G0750732 PROTEIN 5 406 - -
Vimu4g01265 450 MobiDBLite consensus disorder prediction 397 416 - -
Vimu4g01265 450 FunFam calcium/calmodulin-regulated receptor-like kinase 1 204 414 - -
Vimu4g01265 450 ProSiteProfiles Protein kinase domain profile. 113 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01265 Vimu-Chr4 12030565 12033010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01265 24 390 Glycoside Hydrolase AT3G07070 36.788 1.04e-67 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vimu4g01265 PK_Tyr_Ser-Thr 7.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01265 - - gmx:100799586 752.666