Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01264 ATGGACTCGCAACAGCTTTTCAGTTTTGGTGTTGCAAGTGCAGGATTACCTTACATGCCATCTTTTCCCACTGTTCCATCCCTACCCAACAGGCTGCTTGGATCCTTGAAATATGACACTGGAAACTCACCTAATTCACCATTTTCCACTTATTTTGATTCTGACACCCTTTCTGCATTGAGTGACAGCCATGAGCAATACAGCCCCGGAGAAATCCTCTCTGGTGTCAGCTCCTCTTGTAACTCTTCACTGGAAACCAACCAATATAGGCAAAAATCAATCTCTTCTGTGGACTTCATAGACAATTTCCCACTATATTCTGCTTGGAACTCTTTTCCACAGAATGTGAATAGTAGTCAGAAAATCCAACACGCTTTGCTAGAGCTAGAAACTGCTCTGATGGCCCCTGATGATGATCAAGTTACCACACCAAATACATTGGCCGGGAGCAGCAGACCAATGGCATCTGGCCACAGATACAGCAAGCCCTGGAGGCATGAGAACGATGGATCACAATATGCTCAGCCATCATATGTTCCCAGCAGTAGGCTGTCAAGTGAAGTTGTGCATGTAGAGAAACGCCAAAAGTTGACGGAGGAACCATCACTACAAGCTTTCCCACCAAACGATTTGAAGCAGCTGCTGATTGCATGTGCCAAAGCCCTTCATGAAAACAACATCAAAGATTTTGATCAATTGGTAGGAAAGGCTAGAGATGCTGTGTCCATCAACGGGGAGCCAATCCAGCGGCTTGGCGCTTACATGGTAGAAGGGCTTGTTGCAAGGAAGGAAGCATCAGGGAAGAGCATCTATCATGCCCTTAGGTGCAGAGAGCCTGAAGGTGAAGAATTACTCTCTTACATGCAACTGCTGTTTGAGATTTGTCCCTACTTAAAATTTGGTTACATGGCTGCCAATGGAGCCATTGCGGAAGCCTGCAGAAACGAGGATCGCATACACATCATAGACTTCCAAATTGCTCAAGGATCTCAATGGATGACACTTCTTCAAGCCCTTGCAGCAAGACCTGGTGGTGCTCCACATGTTCGGATAACGGGGATTGATGATCCTGTTTCTAAATATGCACGTGGTGGCGATGGATTAGATATTGTTGGTAAAAGGTTGGGCTTGATGTCTGAGAAATTTGGCATCCCAGTTGAGTTTCATGGAGTGCCTGTGTTTGGTGAAGAAGTGACAAGAGAAATGCTAGATATCAGGCCTGGAGAGGCCTTGGCAGTGAACTTCCCCTTGCAGCTCCATCACACAGCTGATGAGAGTGTTCATGTGAGTAACCCAAGGGATGGACTATTAAGATTGGTGAAGTCACTTTCTCCCAAGGTGACCACACTGGTGGAGCAGGAATCAAACACCAACACAACCCCTTTCTTCAACAGGTTTATCGAAACCTTGAATTACTACTTGGCAATCTTCGAGTCTATTGATGCCAGCCTCCTCCCAAGAGATAGCAAGGAGCGGATCAATGTGGAGCAACATTGTCTGGCCAGGGATATAGTGAATATTATTGCTTGTGAAGGCAAGGAAAGGGTTGAGAGACATGAACTATTGGGGAAGTGGAAATCCAGGTTAACAATGGCTGGATTCACTCAGTCTCCTTTGAGCTCTTATGTGAATTCTGTCATAGGAATCCTTCTCAAGTGCTATTCAGAACATTATACTCTTTTGGAGAAGGATGGAGCCATGTTGTTGGGGTGGAAGGATAGAAATTTGATATCAGCTTCAGCCTGGCATTGCTGA 1755 0.4558 MDSQQLFSFGVASAGLPYMPSFPTVPSLPNRLLGSLKYDTGNSPNSPFSTYFDSDTLSALSDSHEQYSPGEILSGVSSSCNSSLETNQYRQKSISSVDFIDNFPLYSAWNSFPQNVNSSQKIQHALLELETALMAPDDDQVTTPNTLAGSSRPMASGHRYSKPWRHENDGSQYAQPSYVPSSRLSSEVVHVEKRQKLTEEPSLQAFPPNDLKQLLIACAKALHENNIKDFDQLVGKARDAVSINGEPIQRLGAYMVEGLVARKEASGKSIYHALRCREPEGEELLSYMQLLFEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGSQWMTLLQALAARPGGAPHVRITGIDDPVSKYARGGDGLDIVGKRLGLMSEKFGIPVEFHGVPVFGEEVTREMLDIRPGEALAVNFPLQLHHTADESVHVSNPRDGLLRLVKSLSPKVTTLVEQESNTNTTPFFNRFIETLNYYLAIFESIDASLLPRDSKERINVEQHCLARDIVNIIACEGKERVERHELLGKWKSRLTMAGFTQSPLSSYVNSVIGILLKCYSEHYTLLEKDGAMLLGWKDRNLISASAWHC 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01264 584 MobiDBLite consensus disorder prediction 138 152 - -
Vimu4g01264 584 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 162 579 IPR005202 -
Vimu4g01264 584 ProSiteProfiles GRAS family profile. 202 583 IPR005202 -
Vimu4g01264 584 MobiDBLite consensus disorder prediction 138 178 - -
Vimu4g01264 584 Pfam GRAS domain family 211 582 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01264 Vimu-Chr4 11997861 12001889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01264 202 582 GRAS Transcription Factor Family AT1G50600 62.730 7.24e-172 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu4g01264 GRAS 4.2e-125 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01264 - - gmx:100799073 960.288