Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01254 ATGGCAGATGATCAATTTCAGGCAAGTGGAAACTGGTGGGACACAGCAAGGAACGTCAGGTATGAAAGCGGGGCGTCACAGTCATCTTCCTCTGCCATCACCAACATAGCAAACTTTGCTTGGCAAGCTTCAGATATGGCAGACATGAAGCCAAGGTCTTCCATGGATTCTTCTTCTGTGGTTTTTCATGACTCACAGAATAAGCTTCAACCCCCAGATTCTACAACTTCCACTGACCCCAACTTGCATATGATGGGTCTAGGCCTGTCATCCCAACCCATGGATTGGAATCAAGCATCTTTGTTAAGAGGAGAGAAGGGTACGGAGAATAGTTTCAGATCGATGTTGCAAGAGAACTTGAGCTCATCAAGAACAAATTTTCAGCAAGAAACTGGGGTGGAGTTGTCTCAACAAGTTCAATGGAGGTCAGAGAAGATGTTCTCTACAGAATCTTCAACCAATGAGTTCAAGCAAGTGAATAGGGGTTTCTCCTTGGATCAAAGCAAGTTTAGTCCACAATATAGTTCTGGGGACAGCACAGTGACAAGCCAAGGGTTACCCTCTTCTAACTTTCAGATGGATTCCTCAGCCTTATACGGGACCCCTTCAATATTGCAAGGACTATTGGGACCTGATCACAATAACCAACAACAACCTTCTTCCTTTGAAAACCGCTCCATGAGTTTTCCATACCAAACAACCTATGGATTAAACTCTAATAATGAACTCATCCCTTCCTGGTCCAAAGTTCCTCAATTTTTGAGAGGTTCACCTCCAAAACAACCACCCAATAACCAGTTGCATTTCACTAACAACGCACCCTTTTGGAACGCTTCTGAGGCTGCAAACTTCAAAGATGTTAGGTCCAGCTTCTTCCCTTCATTGCAACCCCCCTTCTCTACGCCAAATTTCGAAGTACAGTCTAAGAATATATCTGAAGTTAGGGAGTCTGGTACTGTGGGAAAGAAAAGTGGGAATGAGCCAGCACCCAAAAGGACCCGTAACGAAACACCATCTCCTATGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTGTCGCCTTTCGGAAAGACTGATACAGCCTCAGTGCTCTCTGAAGCCATTGAATACATCAAATTCCTCCACGAACAGGTCACTGCCTTAAGTACACCGTATATGAAAAGTGGAGCTTCAATACAGATTCAACAGAATTCTGGTAAATGTAAGGAAACTGAGGGTCCAAAGCAGGATCTAAGAAGCCGAGGGCTATGCTTGGTGCCTGTTTCAAGCACATTCCCAGTAACTCATGAAACCACAGTGGATTTTTGGACACCAACATTCGGAGGAGTTTCCAGATAG 1368 0.4459 MADDQFQASGNWWDTARNVRYESGASQSSSSAITNIANFAWQASDMADMKPRSSMDSSSVVFHDSQNKLQPPDSTTSTDPNLHMMGLGLSSQPMDWNQASLLRGEKGTENSFRSMLQENLSSSRTNFQQETGVELSQQVQWRSEKMFSTESSTNEFKQVNRGFSLDQSKFSPQYSSGDSTVTSQGLPSSNFQMDSSALYGTPSILQGLLGPDHNNQQQPSSFENRSMSFPYQTTYGLNSNNELIPSWSKVPQFLRGSPPKQPPNNQLHFTNNAPFWNASEAANFKDVRSSFFPSLQPPFSTPNFEVQSKNISEVRESGTVGKKSGNEPAPKRTRNETPSPMPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTALSTPYMKSGASIQIQQNSGKCKETEGPKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGVSR 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01254 455 MobiDBLite consensus disorder prediction 49 80 - -
Vimu4g01254 455 MobiDBLite consensus disorder prediction 314 342 - -
Vimu4g01254 455 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 399 IPR036638 GO:0046983
Vimu4g01254 455 Gene3D - 345 407 IPR036638 GO:0046983
Vimu4g01254 455 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 384 IPR011598 GO:0046983
Vimu4g01254 455 CDD bHLH_AtbHLH_like 341 392 IPR045239 -
Vimu4g01254 455 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 123 436 - -
Vimu4g01254 455 MobiDBLite consensus disorder prediction 169 188 - -
Vimu4g01254 455 MobiDBLite consensus disorder prediction 51 80 - -
Vimu4g01254 455 FunFam Transcription factor bHLH123 family 345 407 - -
Vimu4g01254 455 SMART finulus 346 390 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01254 Vimu-Chr4 11705465 11708556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01254 103 455 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 47.704 3.63e-80 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01254 - - gmx:100778697 785.023