Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01246 ATGTTTTTGGATTGTGAGTTTTGTAAGAGAGGTTATGCTCTCAGCACTCTAGTTACGTTCCATTCTCGGATACGTAACAGTTTAAGTGGATTTAAACCAAGATTTCCGAAGCACTGGGACATGATGGACTGGACTCAAGGATGTTTTCTCTCTGAAGAATGGAACTGTGAGGAAAGGAGGAAACATGAGTTTGTTAAATTTAATCAGCTGAAAGCTCCATATACTTCAAATTCTTGGGTCAATGAGAGTATGAGTCTCACTGAGTGCAGGGATAAATTCTTGGAGAATTGTTCTTGTAATGCTTATGCAAATACAGATGTTAGAGGAGGAGGTAAGGGCTGTTTGATGTGGTTTGGTGATCTCAGGGATATCAGAGAGTTTTCTGCTGGTGTAGTCCTCACAACAGCCGCAGTTGTTGCAGCCATTCTGGCTTTGTACCAATTTGGAAAGAGAATGAAAAAGTTCAGAGCTTGTGAATCAAGTAATTCCTTGATAGTAGATAATAATAAAGATGAGGAAGAGCTTGAGCTTCCTTTCTTTGATCAAGCTGCAATCACCAAAGCAACTAATGGCTTCTCAATTAACAATAAGCTTGGAGAAGGAGGATTTGGGACAGGTACCCTAGCAGATGGACAAGAAATTGCTGTGAAAAGACTCTCACAAAGTTCTGGACAAGGGTTTAATGAATTTAAGAATGAGGTCATATTGATAGCCAAACTTCAGCATCGCAACCTAGTTAAGCTTGTTGGTTGTTGCATTCAAGGAGAAGAGAAGATGCTTATCTATGAATACATGCCCAACAAAAGCCTTGACTCCTTTATATTTGGACTTCTGTATCTTCATCAAGATTCCAGATTGAGAATTATACATAGAGACCTCAAAGCAAGTAATGTTCTACTTGATCATGAGTTCAACCCAAAAATATCTGATTTTGGCATGGCTAGAACTTTTGGGGGAGATCAGATTGAAGGAAATACGAAAAGGGTGGTTGGAACATATGGTTACATGGCACCTGAATATGCCATTTATGGTCTATTCTCAGTGAAATCTGATGTCTTCAGCTTTGGTGTACTAATGCTAGAGATAGTAAGTGGAAAGAAGAACAGAGCAATAAATATTGGTAATGACATGTCTGTTACACTGTTTAGGCATGGAGATTTTGGAAAGAAAGCAGACCTTTGGACTTACTTGATTCATGAGCATTGCGTTGTATCCATATCAGTCTTTTATGTGTCCAACAGCATCCTGAGGATAGGCCAAGTATGTCCACTGCTGAGCAGTGAGAGTTCCCTACCTCAACCTAAGGAGCCTGGTTTCCTTATGGAGAAGGAGAAAATTTTTCTTGGAGCAGAGTCCTCTACCAAGCACCTGTTTTCTTCTACCAATGATATAAGTCTTACTATGTTAGAGCCTCGGGCAGTTAATCGATTAACCAAGTGTCTGTTGCAAAAATTAGCCGTTTTCGAGCCATTGGACTATCCGTTGAACTCTTTGAGAAGTGTGTTTGTTGCTCGGCTTGTGAAACTCGCATCTGTAGAGCTGGTGAAGTGCTGCTACGGTGACAGAGGAAATAGATGGTTCATCCTTGGTGTGTCTAAGGAGGTGTGTGGAAGAGGATCATCCTTGGTGTGTCTGAGGAGGTGGTTCATCCTTGGTGTGTCTAAGGAGGTGTTCATCCTTGGTGTGTCTAAGGAGGTGTTCATCCTTCGTGAAGTATTCGAAGGAGGTGTCTCATCCTTTGTGAAGATTCAAAGGAGGTGTAGTCTCATCTCTTGTGGCTTCAAGAAAGAGAGTGCTTCTATCAATAGACCACCTCTATTCACAGGTGAAAACTATGCATTTTGGAAAGTAAGAATGCAAATATTTATTAAGTCTATTGATATTGATATTTGGGAAGCTGTTGTGCATGGTCCATTTGAACCTAAACCTCGTGATTTGTGGACCCTTGAAGATAAGAGAAGAGCACAATACGATGTAAGAGCTTGTAACATTATTTCATCTGCTTTAATTATTGATGAGTTTTACAGGATATCTCTTTGTAAGACTGCTCAAGAAATGTGGGAAGTGCTGAGAGTAACCTACGAAGACATAGATGAATTGAAGTATGCTCAAAACAACTCATCGATCACGGAAGAGAACGATTCAAGCTCTTCATCAAGCACAACATCAAGTATGAGCGATTCAGATGAAGAGGCAAACATTTGTTTGGTGGCAAACGACGACGCTGGAAGCCAAGCACAACCTCTTGAGTCAGTTGAATTAGATGCAAGTAATGATGAAGACTTGCAGAAGACAACAAAAGAAGAAAAGAATTATGAGAATCCCCAAGACGAAGATCTCAAAAGAATATCTTTACACAACGAATTTGGAGATATATCTAATGGGAACTCTTTGAGAAGTGTGTTTGTTGCTCGGCTTGTGAAACTCGCGTCTGTAGAGCTGGTGAAGTGCTGCTACGGTGACAGAGGAAATAGCTGGTTCATCCTTGGTGTGTTTAAGGAGGTGTGTGGAAGAGGATCATCCTTGGAAGTGGTCATTCTTGGTGTGTCTAAGGAGGTGTTCATCCTTCGTGAAGTATTCGAAGGAGGTGTCTCATCCTTTGTGAAGATTCAAAGGAGGTGTAGTCTCATCTCTTGTGGCTTCAAGAGAGGTGAGATAGTGGAGGATAAACTGTGCAGTGCATTTAATTCCCCAGTCATTGGAAACTGTGCGGCAGCAGTAGGGAAAGTGGGAGTTGAAGAAAGTGGAATCCAAGTGTCGCCGAGAGGGAGTGTGAGGTTTCAGAAAGTGGAGTGCAGGTGGCGGCATGAAAATGGATTGTTCGGTCTTGACCATATTTAA 2841 0.4129 MFLDCEFCKRGYALSTLVTFHSRIRNSLSGFKPRFPKHWDMMDWTQGCFLSEEWNCEERRKHEFVKFNQLKAPYTSNSWVNESMSLTECRDKFLENCSCNAYANTDVRGGGKGCLMWFGDLRDIREFSAGVVLTTAAVVAAILALYQFGKRMKKFRACESSNSLIVDNNKDEEELELPFFDQAAITKATNGFSINNKLGEGGFGTGTLADGQEIAVKRLSQSSGQGFNEFKNEVILIAKLQHRNLVKLVGCCIQGEEKMLIYEYMPNKSLDSFIFGLLYLHQDSRLRIIHRDLKASNVLLDHEFNPKISDFGMARTFGGDQIEGNTKRVVGTYGYMAPEYAIYGLFSVKSDVFSFGVLMLEIVSGKKNRAINIGNDMSVTLFRHGDFGKKADLWTYLIHEHCVVSISVFYVSNSILRIGQVCPLLSSESSLPQPKEPGFLMEKEKIFLGAESSTKHLFSSTNDISLTMLEPRAVNRLTKCLLQKLAVFEPLDYPLNSLRSVFVARLVKLASVELVKCCYGDRGNRWFILGVSKEVCGRGSSLVCLRRWFILGVSKEVFILGVSKEVFILREVFEGGVSSFVKIQRRCSLISCGFKKESASINRPPLFTGENYAFWKVRMQIFIKSIDIDIWEAVVHGPFEPKPRDLWTLEDKRRAQYDVRACNIISSALIIDEFYRISLCKTAQEMWEVLRVTYEDIDELKYAQNNSSITEENDSSSSSSTTSSMSDSDEEANICLVANDDAGSQAQPLESVELDASNDEDLQKTTKEEKNYENPQDEDLKRISLHNEFGDISNGNSLRSVFVARLVKLASVELVKCCYGDRGNSWFILGVFKEVCGRGSSLEVVILGVSKEVFILREVFEGGVSSFVKIQRRCSLISCGFKRGEIVEDKLCSAFNSPVIGNCAAAVGKVGVEESGIQVSPRGSVRFQKVECRWRHENGLFGLDHI 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01246 946 CDD PAN_AP_plant 55 130 - -
Vimu4g01246 946 MobiDBLite consensus disorder prediction 750 777 - -
Vimu4g01246 946 Gene3D Transferase(Phosphotransferase) domain 1 265 386 - -
Vimu4g01246 946 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
Vimu4g01246 946 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 26 383 - -
Vimu4g01246 946 FunFam Os07g0541700 protein 268 332 - -
Vimu4g01246 946 Pfam PAN-like domain 58 124 IPR003609 -
Vimu4g01246 946 ProSiteProfiles Protein kinase domain profile. 192 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01246 946 MobiDBLite consensus disorder prediction 705 727 - -
Vimu4g01246 946 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 156 264 - -
Vimu4g01246 946 Pfam Protein kinase domain 193 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01246 946 ProSiteProfiles PAN/Apple domain profile. 56 140 IPR003609 -
Vimu4g01246 946 SMART ntp_6 59 137 IPR003609 -
Vimu4g01246 946 SMART serkin_6 192 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01246 946 SUPERFAMILY Protein kinase-like (PK-like) 178 370 IPR011009 -
Vimu4g01246 946 MobiDBLite consensus disorder prediction 757 777 - -
Vimu4g01246 946 Gene3D Phosphorylase Kinase; domain 1 166 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01246 Vimu-Chr4 11611700 11619994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01246 130 442 Receptor kinase-like Gene Family AT4G23230 46.537 9.54e-87 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu4g01246 Pkinase 1.6e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01246 - - jre:109013535 474.937