Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01242 ATGGTTTCCCCGGAAAACAGCAATTGGCTCTTCGACTATCCGTTGATCGACGATGACATTACTGTCGGAGACGGCTCCTTCACCGTCTCAGCTTCCGCCTTCTCATGGCCCCCGCCTCCCTCCAATGTCAGTGTTGAAATTGATGCTTCACTCGTTGATTCTGATGGCCTCAAAGACCCTGCTTTGAAAAAGAGGGGTAGATCTGATTCATGTACTGCTTCTAGCTCCAAGGCGTGTCGGGAGAAGTTGCGAAGGGATAGACTTAATGACAAGTTTGTTGAATTGGGCTCCATCTTGGAGCCCGGAAGGCCTCCCAAAACAGACAAGGCTGCCATTCTTATGGATGCTGTTCGAATGGTGACGCAGCTCCGGGATGAAGCCCAGAAGTTGAAAGAATCAACTACGAGTCTTCAAGAGAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTCAAGGTGGAGAAAGAGAAGCTGGAGCTACAAGTAAAATCAATGAGTGCCCAACCTGCTTTCTTGCCACCCCCTCCCGCAATTCCAGCCGCATTTGCTCCACAAGCTCAAGCCCCAGGCAACAAGTTGGTGCCTTTCATCAGTTATCCGGGTGTTGCCATGTGGCAATTTATGCCTCCTGCCGCAGTGGATACATCACAGGATCATGTACTCCGTCCACCAGTTGCCTAA 702 0.4972 MVSPENSNWLFDYPLIDDDITVGDGSFTVSASAFSWPPPPSNVSVEIDASLVDSDGLKDPALKKRGRSDSCTASSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILMDAVRMVTQLRDEAQKLKESTTSLQEKIKELKAEKNELRDEKQRLKVEKEKLELQVKSMSAQPAFLPPPPAIPAAFAPQAQAPGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01242 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 123 IPR011598 GO:0046983
Vimu4g01242 233 CDD bHLH_AtILR3_like 77 152 - -
Vimu4g01242 233 Coils Coil 113 175 - -
Vimu4g01242 233 PANTHER BHLH TRANSCRIPTION FACTOR 4 233 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Vimu4g01242 233 SMART finulus 78 129 IPR011598 GO:0046983
Vimu4g01242 233 Gene3D - 64 121 IPR036638 GO:0046983
Vimu4g01242 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 147 IPR036638 GO:0046983
Vimu4g01242 233 FunFam Transcription factor bHLH34 63 121 - -
Vimu4g01242 233 Pfam Helix-loop-helix DNA-binding domain 76 123 IPR011598 GO:0046983
Vimu4g01242 233 Gene3D arf6 gtpase in complex with a specific effector, jip4 122 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01242 Vimu-Chr4 11540006 11541825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01242 1 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 70.000 9.08e-114 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu4g01242 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01242 - - gmx:100801742 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01242 4 11540006 11541825 Vimu4g01242 4 11540006 11541825 ECH
Vimu4g01242 4 11540006 11541825 Vimu5g01102 5 18597913 18601262 PCT