Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01213 ATGAATGGTGCAGCCTCGAGAATGTTCGCATGTTGCAGAAAGGACCCGAAAGTGAAGGCAAAGCCAGTGACGAAAACAAAGTACCCTCCTCGTCGCTCTGGGGATCTCACCATAGAATACGACGTGCTTCAAGCTTTCCAGAACAACTACTATGTCCAAGTGACAATCGAGAACAAACACCCATTGGGTCGTCTTGATCATTGGAACTTGACATGGGAATGGCCAAAGGGAGAGTTCATATATTCCCTTAAAGGAGCTTATGCTCGCAGAAAAGACCCTTCTGACTGCTTGTATGGTTCAGCAGGAAAATTCTACGGTGACATGGATTTCTCGCAAGTTGCAACCTGTCAGAAGAAGCCAATAATCTCTGACCTTCCAGCAGAAAGAGCAGAAGATGAAAAAGTTGGGAAACTCCCTTGGTGCTGCAGGAACGGGACAGTTTTGCCTCCACTCATGAACAAGAACAAAGCTAAATCAATGTTCCAGATGCAAGTGTTCAAAATGCCACCAGATACTGATAACCGAACGGCCATCACACCCCCTATGAAATGGAACATCGATGGTGTCATCAATCCACATTACCAATGCGGTGCACCGGTTAGGGTTGATCCTTCGGTTTTCCCTGAACCCAGTGGACTAAGTGCAATCTCCACAGCTGTAGCAACTTGGCAAATAGTTTGCAACATAACCAAACCCAAGCCTCAGCAAAACCGTTGTTGTGTCTCCTTCTCAGCGTTCTACAACGAATCAGCAATCCCTTGCAACACGTGTGCATGTGGCTGTACTGACACAAGGAAGTGCAACTCTCAGGCTTCTCCATTGCTTCTTCCACCAGAGGCTCTTCTTGTACCGTTTGCAAACAGAACCGTGAAGGCACGAGCATGGGCCAAACTCAAGCACTTGCACGTTCCTAGCAGGCTCCCTTGTGCAGATAACTGCCCCGTGAGCATCAACTGGCACGTGAATTCGGATCACAAGGAGGGATGGACTGCTAGGATAACAATTTTCAATTGGGAGGATTTCTCATTTGATGATTGGTTCACTGCTATTCAGTTGACGAGGACTTTCGACGATTTTGAAGATGTTTATTCCTTCAACGGGACAAGAATTCCTGGTCTGAAAACCATTTTCTTAGAAGGCCTGAAGGGTTTGAATTACTTGGCTGGAGAAACCAATGGAACATATGCTAAAGACCCTAGGGTTCCAGGGAAACAACAATCTGTGCTTTCTTTCACCAAAAAGCACGTAAAACATTTTGATATCACAAAAGATGGGTTCCCCTCTAAGGTTTATTTCAATGGAATGGAGTGCTCACTTCCCCCGATCAGACCACACAAAAGTTCGGGGCATAAATCTTCCATCAGTGTCATTGCACTCATATTGACAGCGTTTGTGACTCTCTTGCTGATATAA 1413 0.4579 MNGAASRMFACCRKDPKVKAKPVTKTKYPPRRSGDLTIEYDVLQAFQNNYYVQVTIENKHPLGRLDHWNLTWEWPKGEFIYSLKGAYARRKDPSDCLYGSAGKFYGDMDFSQVATCQKKPIISDLPAERAEDEKVGKLPWCCRNGTVLPPLMNKNKAKSMFQMQVFKMPPDTDNRTAITPPMKWNIDGVINPHYQCGAPVRVDPSVFPEPSGLSAISTAVATWQIVCNITKPKPQQNRCCVSFSAFYNESAIPCNTCACGCTDTRKCNSQASPLLLPPEALLVPFANRTVKARAWAKLKHLHVPSRLPCADNCPVSINWHVNSDHKEGWTARITIFNWEDFSFDDWFTAIQLTRTFDDFEDVYSFNGTRIPGLKTIFLEGLKGLNYLAGETNGTYAKDPRVPGKQQSVLSFTKKHVKHFDITKDGFPSKVYFNGMECSLPPIRPHKSSGHKSSISVIALILTAFVTLLLI 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01213 470 PANTHER COBRA-LIKE PROTEIN 7 5 469 - -
Vimu4g01213 470 Pfam COBRA-like protein 50 230 IPR006918 GO:0010215|GO:0016020
Vimu4g01213 470 PIRSF COBRA 6 470 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01213 Vimu-Chr4 10998312 10999724 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01213 5 470 COBRA Gene Family AT3G20580 60.593 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01213 - - gmx:100786691 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01213 4 10998312 10999724 Vimu4g01213 4 10998312 10999724 ECH