Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01206 ATGCTTTATTCATGTTCTCAGAATGATACCTTGCAAAACAATAATGGGTGTGGATCATCGGCATTTGATTCTGCACAGTTTGGAGATGCTAATGCTCCTTTATTGGATTCTAGTTCCAAAGAAGACCGAGCCAGTGACATTATTTTAGGATTTTCAATATATACTATGAGAAGTGAAATCATCGAGCATGCATTTCGTGGCATGGATGAATTGGCAAAGATTGGCATTGCAGAGAAACCTTTATGGCAGCGACAGCCACAAAACAGTAGCTGTGAGATTTTGAATGATACTGAATATTTGAAGCAGTTTGGTGAAGTTGATACCACGCTAAGCGAGATTGTTAAGTTGATGGAGGTTGGAGAGTCTCAAAATTTACCTAGTTTTGACACATATCAAACTGAGCATCCAATAACAACAACTGTGACTCCCACTGTAACTTCACACTCTGAAGGTTCAAGAGATATGGCCTATATAAGCATCGCGCCAATTTGCATAGTTGAATTACTCATGGATGTGAATCAATGGTCTGGAGTGTTTTACAATATTGTCTCAAAAGCGGCAATAGTAGGAACTTTGTTAGGAGTAGATGGAAGCTATGATAACAGATTGCAGGTGATGAGCGCAGAACTTCATTTGCCTTCGCCTGTTTTATTGACCAGGGAGTGTTATTTTGGAAGGTACAGCAAGCAGTTATCTCATAACACATGGGGGGTTGTAGATGTATCATTGGAGAAATTTCTTCCTTCCCCAACCACCAATTTTCGGAAAAAACCATCTGGATGTTTGATTAAGTTAATGCCTAATGGACACTCTAAGGTCACATGGGTGGAGCATGTAGAAGTAGAAGAGAATCAAGTGGACCATTATTTCCAGTCTCTATTCACCTCCACTCTAGCTTTTGGCGCAAGCCGTTGGATTAATTCCTTAATTCGATATGGTGAATGGTTACAAAGTCTATTCGTAACACCGTTGGTTGCTGATGAAGGAGTTTTTATAGCACAAATGGGGAGGACCAGTTTGCTGCAACTGGCAGATAGAATGATGAAAACATTTTGTGGAAACGTGAGTTCCACCACAGACAATCCGTGGACCCAAATGGCTCATTCCCCATACGTGAGAATCATGGTGAAGAATAACATGGGAGAAGCTGGAAAGCCTCCAGGTACATCCGTTGTTTTCACAACTTCTGTTTGGCTTGATATCTCCCGGAATCGACTGTTCAACTTCCTCCGCCATGGGCATTCCAGAACCAAGTGGGATTTACTTTCACGTAGACATAATATTCGAGAGTTTGCTTCAATGCTGAAGGGTGAAAATCCAGGAAATCGTGTTTCCCTGATGAGAGCCCATGGCAAGCTTGTAATCTGTTTTCTGCAAGAGAGTTACACAGACTCAACAGGTTCGTATATAGTGTATGCTCCACTGGATGAGTCAGCTGTGGCAGCTCTTATACACGGAGCCAACCCTGACAAAGTGATGATCCTACCATCAGGATTTAGCATTCTTCCTGAAAGGTTGCATGGAGATGAAGATAAAAACAGTCGAAGTCTTCTAACTATTGCATTCCACATAGTTGAAAGTACCACTAATGAGCCGTATCTCGCTCCTGAATCAATCGAAACCATATACAAAGTCATTTCAGATACTGTTTACTCTATAACAAACTCAGTGCTGTATCATAATCATCGCAACAATTGGATGGATGATTCAAATTTCTAG 1719 0.4113 MLYSCSQNDTLQNNNGCGSSAFDSAQFGDANAPLLDSSSKEDRASDIILGFSIYTMRSEIIEHAFRGMDELAKIGIAEKPLWQRQPQNSSCEILNDTEYLKQFGEVDTTLSEIVKLMEVGESQNLPSFDTYQTEHPITTTVTPTVTSHSEGSRDMAYISIAPICIVELLMDVNQWSGVFYNIVSKAAIVGTLLGVDGSYDNRLQVMSAELHLPSPVLLTRECYFGRYSKQLSHNTWGVVDVSLEKFLPSPTTNFRKKPSGCLIKLMPNGHSKVTWVEHVEVEENQVDHYFQSLFTSTLAFGASRWINSLIRYGEWLQSLFVTPLVADEGVFIAQMGRTSLLQLADRMMKTFCGNVSSTTDNPWTQMAHSPYVRIMVKNNMGEAGKPPGTSVVFTTSVWLDISRNRLFNFLRHGHSRTKWDLLSRRHNIREFASMLKGENPGNRVSLMRAHGKLVICFLQESYTDSTGSYIVYAPLDESAVAALIHGANPDKVMILPSGFSILPERLHGDEDKNSRSLLTIAFHIVESTTNEPYLAPESIETIYKVISDTVYSITNSVLYHNHRNNWMDDSNF 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01206 572 ProSiteProfiles START domain profile. 53 318 IPR002913 GO:0008289
Vimu4g01206 572 Pfam START domain 138 310 IPR002913 GO:0008289
Vimu4g01206 572 SUPERFAMILY Bet v1-like 335 524 - -
Vimu4g01206 572 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 43 556 IPR042160 -
Vimu4g01206 572 SMART START_1 106 315 IPR002913 GO:0008289
Vimu4g01206 572 SUPERFAMILY Bet v1-like 147 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01206 Vimu-Chr4 10926526 10932958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01206 46 557 Homeobox Transcription Factor Family AT4G04890 38.806 1.10e-112 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01206 K09338 - jre:108992281 490.345