Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01201 ATGTTCAAAGCAATAGCTTCTGCGCAGGTTCTTGGATGGAAGAGGGCTATGACGGATTTCGCCAATTCAGTTGGTTGGGATATGAGGGACAAGCCAGAGTTTGAACAGATTCAAAGCATTGTTCTAGAAGTAATTAAAAAATTAGGTCGTAAGTTTTCAAGGTCTGTGAATGACCTTATTGGGATACAACCTCGCGTACAAGCATTAGAAGACAAATTAAGATTAAGCTCAAACAGTGATGATGTTCAAGTTTTAGGAATTTGGGGAATGAAGGGAATAGGAAAGACTACTCATGCAGCTGTCCTATATGACAAAATTTCTCATAGGTTTCATGCTTCTTGCTTCATTGAGGATGTGAACAAACTATATAGGGATGGTGGCCATACTGCTGTTCAAAAGCAAATTATTCATCAAACTTTACGTGAAAACATAGATATGAGTAATCCTATTGAAATATCAGGGATTGTAGAAAATAGGCTACACAGCATAAAGGTCCTCATAGTTCTGGACAATGTTGATGAATTAGAGCAATTGGAAAATTTGGCCATAAAACCTAAATTGCTTTTGAAGGGAAGTAGGATGGTTATTACAACCACAGATGAGCATATTCTGAAAGCTTATGAGGGTGATGTGTTGATACACAAGCTTCCATTATTGAACGATGCGGATGCTCGTGAATTATTCTGTAGAAAGGCTTTCAAATATGAAGATCAAAGCAGTAATTGTTCGGCGTTGATTCATGAAGTACTCAAATATGCCCAATGCCTTCCACTGGCAATTAGAGTGTTGGGTTCTTTCTTGTGTACTCGAGATGCTGATGAATGGAGAGATGGAACAGAGAAGGTGAAAGCCATAGTATTAAATAAAAAAGAAGAAATGTCAGAATGTATTGTTGACGGATTGTCAAGAATGAAGGAGCTTACATTACTGATATTATATCACACAAGAGTTTCAGGAAGGCTTGAGTTTCTTTCAGACAGACTGCAATATCTATTGTGGCATGATTATCCTTTTGCTTCTCTCCCTCCATACTTTACAGCCTCTAATATTGTGGAATTGAATATGCCTAATAGTCACATCAGACATTTATGGGAAGGTCGCAAGAGCTGTCCTAACTTGAAAAGGATTGATTTAAGCAACTCCAAGGATTTGAGTGAGACTCCAGATTTTTCCAGAATCATAAAACTTGAAAGGCTAGATCTTTCTGGATGTACAAGTTTATCTTATGTCCATTCATCAATTGGACTTCTTAAGAAGCTTGCTTTCTTGAATTTACGAAATTGTTGCAATCTAGTTTCCATTGACTTTGGCTGTGTAGGCAACATGAGTTCTCTGAGAGTTCTACATCTCTCGGGCTGTTCTAAACTTGAAAGCACCCCAGATTTTACAAGGGCAACACATCTTGAGTACCTTGACATGGATGGATGTACAAGCTTATCCACTATTCATCAATCTATTGGAGTCCTTTCAAATCTTACATTCTTAAGTTTAAGAAAATGCCAAGAGCTTGTCAGTATACCAAATGATATCAATTTCTTGGTATCTCTTCAAACTCTAGATTTATACGGTTCTTTTAACCGTATGCATCCGATACCAGGACAAGGTTATATGTCCCATTTGGAATACCTTAACCGTACGAATCCGATACTAAGACAAGCTTTTTCGTCGCATTTGGTATCCTTGATTTTTCTGGACATAAGTTATTGCAATCTAAAAGAAGTACCTGATGCTATTGGAGAATTGAGATGTTTAGAAAGACTGAATCTAGAGGGAAACAAATTTGTTTCAATACCTGATTCCTTCAGACAGCTTCATTGTCTAGCATATTTAAACTTGTCTCATTGTTATTTGCTTAAATCTTTGCCTGACCTTCCAAATGAAGGAGATAAATCAGGGGGGAAGTATTTTAAAACGGTATCTGGATCTCGTGATCATAGGTCAGGCTTTTATCTTTTTGATTGTCCCAATGTGTCTCGTGATAGACTTGAGTTCGTCGGACTTGAACGCTTCTTCCACCTAATTAAGGAACCCTGTAATTTTCGGTGTGGCTTTGACCTTGTTCTTCCTTGGAATATGGGAGTTCGACCTGTCTTCGGTGAAACATTCTTACGGAATTCAATTATAAGGATACTTCGATGTGGTATAAATGACAACTGGATTGGCTTTGGTTTTTTTGTTATATTTAGGAAAATTACTGTTGGTGGATCTCCTCCTCACTCTTCATTTTCTTCATTGCATCCACTTTATCTTTCTTTTGAAAGTGAATACACAGAAGAGTGCTTTGATATGCGACTTAATTTGAAGAGAGATCAAAGCTATGGATCTATTTGGATAATTTACATCAGTCGAGAACACTGTCATTTTGTGAAAACAGGGGCGCATATCACATTTAAAGCGCAACCAAATGTTGTGATCAACGAATGGGGGATGAGACCTATACTCAAACAAGATATAAGTGACAGTAAAGAGCAGAAATACATAAAATTTTCCAAATTAAATCATGATCATGTGGACTTTGAGTATGTTAAAAAAAGCAACAGGGGTTCAGGGCCGAAAATCCAGCTTCCTTACAATTGGTATGTCACTGAGGAAGAGCAAGTTGAGAATATTGACGCAAAGGCGAAAGAAAATAATCTCTCCAATGCAGGGCTTTAA 2655 0.3744 MFKAIASAQVLGWKRAMTDFANSVGWDMRDKPEFEQIQSIVLEVIKKLGRKFSRSVNDLIGIQPRVQALEDKLRLSSNSDDVQVLGIWGMKGIGKTTHAAVLYDKISHRFHASCFIEDVNKLYRDGGHTAVQKQIIHQTLRENIDMSNPIEISGIVENRLHSIKVLIVLDNVDELEQLENLAIKPKLLLKGSRMVITTTDEHILKAYEGDVLIHKLPLLNDADARELFCRKAFKYEDQSSNCSALIHEVLKYAQCLPLAIRVLGSFLCTRDADEWRDGTEKVKAIVLNKKEEMSECIVDGLSRMKELTLLILYHTRVSGRLEFLSDRLQYLLWHDYPFASLPPYFTASNIVELNMPNSHIRHLWEGRKSCPNLKRIDLSNSKDLSETPDFSRIIKLERLDLSGCTSLSYVHSSIGLLKKLAFLNLRNCCNLVSIDFGCVGNMSSLRVLHLSGCSKLESTPDFTRATHLEYLDMDGCTSLSTIHQSIGVLSNLTFLSLRKCQELVSIPNDINFLVSLQTLDLYGSFNRMHPIPGQGYMSHLEYLNRTNPILRQAFSSHLVSLIFLDISYCNLKEVPDAIGELRCLERLNLEGNKFVSIPDSFRQLHCLAYLNLSHCYLLKSLPDLPNEGDKSGGKYFKTVSGSRDHRSGFYLFDCPNVSRDRLEFVGLERFFHLIKEPCNFRCGFDLVLPWNMGVRPVFGETFLRNSIIRILRCGINDNWIGFGFFVIFRKITVGGSPPHSSFSSLHPLYLSFESEYTEECFDMRLNLKRDQSYGSIWIIYISREHCHFVKTGAHITFKAQPNVVINEWGMRPILKQDISDSKEQKYIKFSKLNHDHVDFEYVKKSNRGSGPKIQLPYNWYVTEEEQVENIDAKAKENNLSNAGL 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01201 884 Gene3D Ribonuclease Inhibitor 462 631 IPR032675 -
Vimu4g01201 884 Gene3D Ribonuclease Inhibitor 334 461 IPR032675 -
Vimu4g01201 884 Pfam Leucine rich repeat 564 617 IPR001611 GO:0005515
Vimu4g01201 884 PRINTS Disease resistance protein signature 440 456 - -
Vimu4g01201 884 PRINTS Disease resistance protein signature 84 99 - -
Vimu4g01201 884 PRINTS Disease resistance protein signature 253 267 - -
Vimu4g01201 884 PRINTS Disease resistance protein signature 159 173 - -
Vimu4g01201 884 Gene3D - 43 212 IPR027417 -
Vimu4g01201 884 Gene3D - 218 300 IPR042197 -
Vimu4g01201 884 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 442 516 IPR044974 GO:0006952
Vimu4g01201 884 SUPERFAMILY L domain-like 297 624 - -
Vimu4g01201 884 Pfam NB-ARC domain 69 288 IPR002182 GO:0043531
Vimu4g01201 884 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 302 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01201 Vimu-Chr4 10845824 10859836 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01201 438 622 WRKY Transcription Factor Family AT4G12020 35.204 6.87e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01201 - - vra:106778496 989.564