Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01200 ATGACGATGACGATGATAGACAAATTAGGGTTTAGAAGGTTTTGGGACTGGTTGGATAGTCGATCATCCTCTTCCAGTGTTATCTCATCAGAATCTGCTACTTCTTCTTCCGATCATTCCTCGGACACCATCCAAAACCAAGACTACAGGTACGATGTGTTCATCAGTTTCAGAGGTTCTGACACCCGCAACTCTTTCGTTGATCATCTCTACTCTCATCTTCTCCGGAAGGGTATTTTTGTCTTTAAAGACGACCACAAGCTTCGCAAAGGAGAATCCATTTCATCACAGCTTCTACAAGCAATCAGAGGTTCTCGAATTTCTATCATCGTTTTCTCCAAAGATTATCCTTCCTCGTCGTGGTGTTTGGAAGAAATGGCCACTATAGCTGATTGCAAACAGCAATCTAACCAAACTGTTTTCCCTGTTTTCTATGATGTTGATCCGTCTCACGTACGACATCAGAATGGGGTATACGAGAATGCCTTCCTTTCGCTGAGACAGAAATTCAAAGGAAAGCCAGATAAGGTTTATCGGTGGGAGAGAGCTATGAATTGGTTTGGCACATTAGCTGGTTGGGATGTCAGAAACAGGCCAGAATTTGGGGAAATTGAAAATATTGTTCAAGCGGTAATACAAACACTGGGTCATAAATTCTCTGGGTTTGTTGATGATCTTATTGGCATACAACCTCGCGTACAAGCATTAGAAGATAAATTAAGGTTAAGTTCAAAAACTGATGATATTCAAGTTTTAGGAATTTGGGGAATGGGTGGAATAGGAAAGACGACTCATGCAGCTGTGCTATATGACAAAATGTCTCATAGGTTTGATGCTTCTTGTTTCATTGAGGATGTGAGCAAACTTTATAGAGATGGTGGCCATACTGCTGTTCAAAAGCAAATTATTCATCAAACTTTGGGTGAAAAAAGTCTACATACATACAGTCCTATCGAAATATCAGGGATTGTAAGAAATCGGCTACATAAGATAAAGGTTCTTGTAGTTCTTGACAATGTTGATGAATTAGAGCAATTGCAGGAACTGGCAATAAATTCTAAATTGGTTTTCAGAGGAAGTAGGATGATTATTATCAGTAGGGATGAGCATATTCTAAAAGTGTATGGAGCTGATGTAATACACAAAGTATCATTAATGAGTGATAAAGATGCTCCGTTCAAAAGTGAAGAGCAAAACAGTGGTTGTGTGGAATTGATTCCTGAGGTACTCAAATATGCCCAATGTCTTCCATTAGCGGTTAGAGTGATAGGGTCTTTCTTGTGTAGAAGAAATTCTAGTGAATGGAGAGATACTTTGGATAGATTTGAGAACAATCCAGATGATAATAAAATCATGGAGGTACTTCAAATAAGTTTTGATGGGCTACACTATATGGAAAAAGAAATATTTTTACACATTGCTTGTTTCTTTAAAGAAGAGAGGGAGGATTATGTTAAGCGAATTCTGGAGTGTTGTGGATTACACCCTCACATTGGAATTCCAAGAATGATTGAGAAATCGCTCATAACAATTAAAGATCAACAAATTCATATGCATAATATGTTACAAGAATTGGGGAAGAAGATTGTTCGCAACCAATGTCCCGAAGAACCAGAATCATGGAGTAGAATATGGCTTTATGAAGATTTCTTTCATGTGCTGACGACCCAAACGGCTTTTGTATTTGCCTTACCTTTCACTAAGATGTACTTCATCAACGGGAAGGTGGTTCGAAATGGATCTCGTGATCTCGTGATAAATTGGATGGATCCACTCAATTACCAAGAACTTACATGGCTTGTAAGACTAGCTAAGACACAGAAAAATTTGGAGCACATATCTCATTTAAAGCTCATCCAAGTCTTGAGATTAATGCATTTAAAGCGCGTCCAAGGGTTGAGATTAATGCACGGAGGATGA 1920 0.3859 MTMTMIDKLGFRRFWDWLDSRSSSSSVISSESATSSSDHSSDTIQNQDYRYDVFISFRGSDTRNSFVDHLYSHLLRKGIFVFKDDHKLRKGESISSQLLQAIRGSRISIIVFSKDYPSSSWCLEEMATIADCKQQSNQTVFPVFYDVDPSHVRHQNGVYENAFLSLRQKFKGKPDKVYRWERAMNWFGTLAGWDVRNRPEFGEIENIVQAVIQTLGHKFSGFVDDLIGIQPRVQALEDKLRLSSKTDDIQVLGIWGMGGIGKTTHAAVLYDKMSHRFDASCFIEDVSKLYRDGGHTAVQKQIIHQTLGEKSLHTYSPIEISGIVRNRLHKIKVLVVLDNVDELEQLQELAINSKLVFRGSRMIIISRDEHILKVYGADVIHKVSLMSDKDAPFKSEEQNSGCVELIPEVLKYAQCLPLAVRVIGSFLCRRNSSEWRDTLDRFENNPDDNKIMEVLQISFDGLHYMEKEIFLHIACFFKEEREDYVKRILECCGLHPHIGIPRMIEKSLITIKDQQIHMHNMLQELGKKIVRNQCPEEPESWSRIWLYEDFFHVLTTQTAFVFALPFTKMYFINGKVVRNGSRDLVINWMDPLNYQELTWLVRLAKTQKNLEHISHLKLIQVLRLMHLKRVQGLRLMHGG 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01200 639 Gene3D - 384 463 IPR042197 -
Vimu4g01200 639 PRINTS Disease resistance protein signature 251 266 - -
Vimu4g01200 639 PRINTS Disease resistance protein signature 413 427 - -
Vimu4g01200 639 PRINTS Disease resistance protein signature 327 341 - -
Vimu4g01200 639 SUPERFAMILY Toll/Interleukin receptor TIR domain 40 193 IPR035897 -
Vimu4g01200 639 Pfam NB-ARC domain 244 460 IPR002182 GO:0043531
Vimu4g01200 639 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51 612 IPR044974 GO:0006952
Vimu4g01200 639 SMART till_3 50 190 IPR000157 GO:0007165
Vimu4g01200 639 SUPERFAMILY "Winged helix" DNA-binding domain 449 554 IPR036390 -
Vimu4g01200 639 Gene3D - 45 220 IPR035897 -
Vimu4g01200 639 Gene3D - 223 380 IPR027417 -
Vimu4g01200 639 Pfam TIR domain 51 217 IPR000157 GO:0007165
Vimu4g01200 639 ProSiteProfiles TIR domain profile. 49 215 IPR000157 GO:0007165
Vimu4g01200 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 473 IPR027417 -
Vimu4g01200 639 FunFam Disease resistance protein (TIR-NBS-LRR class) 47 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01200 Vimu-Chr4 10839358 10843193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01200 227 545 WRKY Transcription Factor Family AT5G45050 33.030 3.38e-44 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01200 - - var:108332841 951.429