Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01197 ATGGTGAAAACTAAAGCAGGGCTTAAGCGGTTTTGGGACCGCTTCGGTGGTCGATCATCGGGATACACTTCTTCTTCTTCATACGACTCCTCGGACAGCATCCAAAACCAAGACTACAGATACGATGTGTTTATCAGTTTCAGAGGTCCTGACACCCGCAACTCTTTTGTTGATCATCTCTGCTCTCATCTCCTCCGAAAGGGCATTTTCGTATTCAAGGATGATCACAGTCTACAGAAAGGAAAATCCATTTCCCCACAGCTTGTACAAGCAATTCAACTTTCACGCCTTTCCATCATTGTCTTTTCCAAAAATTATGCTTCCTCAACTTGGTGTTTAGATGAAATGGCCGCTATAGCTTCTTGCAAACAACGATCAAACCACATTGTGTTTCCCATTTTTTATGATGTAGATCCATCTCATGCAAGGCATCAGAATGGGGTATACGAGAATGACTTCGTTTCACACAGACGCAAATTCAGAAAAGATCGGGACAAGGTTCGTGGATGGGAGAGGGCTATGACGGATTTGGCCAATTCAGCTGGTTGGGATGTGAGGGACAAGCCAGAGTTTGAACAGATTCAAAACATTGTTCAAGCAGTAATTAAAAAATTAGGCCATAAGTTTTCGTGGTTTGTCGATGACCTTATTGGGATACAACAACGCGTACAAACATTAGAAGACAAATTAAAACTAAGTTCAAACAGTGATGATGTTCAAGTTTTAGGAATTTGGGGAATGAATGGAATAGGAAAGACTACTCATGCAGCTGTCCTATTTGACAAAATCTCTCATAGGTTTGATGCTTGTTGTTTCATTGAGAATGTCAGCAAACTTTATTCAGATGGTGGCCATACTGCTGTTCAAAAAGAAATTATTTATCAAACTTTAGGTCAAAAAGGTCTAGATATGTGTAGTCCTGTTCAAATATCTGGGATTGTAAGAACTAGGATACACAACATAAAGGTTCTCATAGTTCTTGACAATGTCGATGAATTAGAGCAATTGGAAAATTTGGCCATAAAACCAAAATTGCTTTTGAAGGGAAGTAGAATGGTTATTACCACCACAGATATGCATATTCTGAAAGTGTATGAGGGTGGCGTATTGATACACAAGGTTTCATTATTGAATGATAAGGTTGCTCGTGAATTGTTCTGTAGGAAAGCCTTCAAAAGTGAAGAGCAAAGCAGTAGTTGTGAGGCGTTGATTCCTGAGGTACTCAAGTATGCCCAATGTCTTCCATTGGCAATTAGAGTGTTGGGTTCTTTCTTATGTACTCGAGATGCTGATGAATGGAGAGATGTGTTGAATAGATTGGAGAATAGTCCAGATGACAAAATTATGAATGTACTTCAAATAAGTGTTGATGGACTACAACGTGAGGAAAAACAAATATTTTTACACATTGCATGTTTCTTTAAAGGGGAGAGGGTGGATTTTGTTAAGCGAATTCTAGACTGTTGTGAGTTATACCCTCACATTGGAATTTCAAGACTCATTGAGAAATCACTCATCACTATTAGCAATGAAGAAATTCATATGCATGAATTGTTACAAGAATTGGGAAAGAAAATGGTTTGGGACCAATCTCCACAAGAACCAAGATTCTGGAGTAGAATATGGCTTCATAAAGACTTCTTGCAAGTCTTGAATGCAGAAACGGGAACAGAAAAGGTGAAAGCCATAGTTTTAAATAAAGAAGAAGAAATGTCGGAATGTAGTATTGGTGGATTGTCAAGAATGAAGGAGCTTACATTGCTTATATTATATCACACAAAAGTTTCAGGAAGCTTGGAATTTCTTTCAAACAGGCTGCGATATCTATTGTGGCATGATTATCCTTTTGATTCTCTGCCTCCATATTTTACGGTCTCTAATCTCGTGGAGTTGAATATGCCTAACAGTCACATCATAAGTTTATGGCACGGTAGCAAGAGCTGTCCCAACTTGAAAAGGATCGATTTAAGCAACTCCAAGTATCTGAGTGAGACACCAGATTTTTCCAGAATCATAAAACTTGAAAGGCTAGATCTTTCTGGATGTACAAGTTTATCTTATGTCCATTCATCAATTGGACTTCTTAAGAAGCTTGCTTTCTTGAATTTACGAAATTGTTGCAATCTAGTTTTCATTGACTTTGGCTATGTAGGCAACATGAGTTCTCTGAGAGTTCTATATCTCTCGGGTTGTTCTAAACTTGAAAGCACCCCAGATTTTACAAGGGCAACACATCTTGAGTACCTTGACATGGATGGATGTACAAGTTTATCCACTATTCATGAGTCTATTGGAGTCCTTTCAAATCTTACATTCTTAAGTTTAAGAAAATGCGAAAAGCTTGTCAGTATACCGAATGATATCAATTTCTTGGTATCTCTTCAAACTCTAGATTTATGCAGTTGTTTGAACCTTAAAGATATGCTACAAAGACAAGCATCTTCATCCCATTTAAAATCCTTGATTTTTCTGGACCTGAGTTTTTGCAATATAGAAGAAGTACCTGATGCTATTGGAGACTTAAGATGTTTAGAAAGACTGAATCTACAGGGAAACAATTTTGTTTCATTACCTGATTCCTTCAGTCAGCTTTATTGTCTAGCATATTTAAACTTGTCTCATTGTCATAAGTTTAAATCTTTGCCTGACCTTCCAAATGAAGGAGATAAATCAGGGGGGAAGTATTTTAAAACGGTATCTGGATCTCGTGATCATAGGTCAGGCTTTTATCTTTTTGATTGTCCCAATGTGTCTCATGATAGACTTGAGTTCGTCGGACTTGAATGCTTCTTCCACCTAATTAAGGAACCCTGTAATTTTCGGTGTGGCTTTGACCTTGTTCTTCCTCGGGATAGGAGATTTCGACCTGTCTTCGGTGAAACATTCTTAGGGAATTCAATTATAAGGATACTTCAGTGTGTTATGAATGACAACTGGATTGGCTTTAGTTTTTTTGTTATATTTAGGCAAAATACTGTTGGTGGATCTCCTCCTCACTCTTCATTTTCTTCATCGCATCCACTTTATCTTTCTTTTGAAAGTGAATACACAGAAGAGTACTTTGATATGCGACTTAATTTGAAGGCGGATCAAAGTGAAGAATCTGCACATATTTGGTTAATTTACATCAGTCGAGAACACTGTCATTTTGTGAAAACAGGGGCGCTTATCACATTTAAAGCGCAACCAAATGTTAAGATCTATGGATGGGGGATGAGACCTATACTCAAACAAGATATACAAGACATTAAAGGGAAGAAATACATACAATTTTTCAAATTAAATAATGATCATGTGGACTTTGAGTATGTACTAAAAAGCAACAGTTGTTCAGGGCCGAAAATCCAGCTTCCTTACAATTGGTATGTCACAGAGGAAGAGCAAGTTGAGAATATTGATGCAAAGGCCAAAGAAAATAATCTCTCTAATGCAGGTCTTTAA 3441 0.3758 MVKTKAGLKRFWDRFGGRSSGYTSSSSYDSSDSIQNQDYRYDVFISFRGPDTRNSFVDHLCSHLLRKGIFVFKDDHSLQKGKSISPQLVQAIQLSRLSIIVFSKNYASSTWCLDEMAAIASCKQRSNHIVFPIFYDVDPSHARHQNGVYENDFVSHRRKFRKDRDKVRGWERAMTDLANSAGWDVRDKPEFEQIQNIVQAVIKKLGHKFSWFVDDLIGIQQRVQTLEDKLKLSSNSDDVQVLGIWGMNGIGKTTHAAVLFDKISHRFDACCFIENVSKLYSDGGHTAVQKEIIYQTLGQKGLDMCSPVQISGIVRTRIHNIKVLIVLDNVDELEQLENLAIKPKLLLKGSRMVITTTDMHILKVYEGGVLIHKVSLLNDKVARELFCRKAFKSEEQSSSCEALIPEVLKYAQCLPLAIRVLGSFLCTRDADEWRDVLNRLENSPDDKIMNVLQISVDGLQREEKQIFLHIACFFKGERVDFVKRILDCCELYPHIGISRLIEKSLITISNEEIHMHELLQELGKKMVWDQSPQEPRFWSRIWLHKDFLQVLNAETGTEKVKAIVLNKEEEMSECSIGGLSRMKELTLLILYHTKVSGSLEFLSNRLRYLLWHDYPFDSLPPYFTVSNLVELNMPNSHIISLWHGSKSCPNLKRIDLSNSKYLSETPDFSRIIKLERLDLSGCTSLSYVHSSIGLLKKLAFLNLRNCCNLVFIDFGYVGNMSSLRVLYLSGCSKLESTPDFTRATHLEYLDMDGCTSLSTIHESIGVLSNLTFLSLRKCEKLVSIPNDINFLVSLQTLDLCSCLNLKDMLQRQASSSHLKSLIFLDLSFCNIEEVPDAIGDLRCLERLNLQGNNFVSLPDSFSQLYCLAYLNLSHCHKFKSLPDLPNEGDKSGGKYFKTVSGSRDHRSGFYLFDCPNVSHDRLEFVGLECFFHLIKEPCNFRCGFDLVLPRDRRFRPVFGETFLGNSIIRILQCVMNDNWIGFSFFVIFRQNTVGGSPPHSSFSSSHPLYLSFESEYTEEYFDMRLNLKADQSEESAHIWLIYISREHCHFVKTGALITFKAQPNVKIYGWGMRPILKQDIQDIKGKKYIQFFKLNNDHVDFEYVLKSNSCSGPKIQLPYNWYVTEEEQVENIDAKAKENNLSNAGL 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01197 1146 Pfam NB-ARC domain 222 449 IPR002182 GO:0043531
Vimu4g01197 1146 Pfam Leucine rich repeat 824 876 IPR001611 GO:0005515
Vimu4g01197 1146 Gene3D Ribonuclease Inhibitor 543 714 IPR032675 -
Vimu4g01197 1146 SUPERFAMILY L domain-like 572 883 - -
Vimu4g01197 1146 Gene3D Ribonuclease Inhibitor 812 894 IPR032675 -
Vimu4g01197 1146 Gene3D Ribonuclease Inhibitor 717 811 IPR032675 -
Vimu4g01197 1146 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 470 IPR027417 -
Vimu4g01197 1146 Gene3D - 17 176 IPR035897 -
Vimu4g01197 1146 Pfam TIR domain 41 208 IPR000157 GO:0007165
Vimu4g01197 1146 Gene3D - 177 367 IPR027417 -
Vimu4g01197 1146 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 41 707 IPR044974 GO:0006952
Vimu4g01197 1146 SMART till_3 40 180 IPR000157 GO:0007165
Vimu4g01197 1146 PRINTS Disease resistance protein signature 241 256 - -
Vimu4g01197 1146 PRINTS Disease resistance protein signature 317 331 - -
Vimu4g01197 1146 PRINTS Disease resistance protein signature 411 425 - -
Vimu4g01197 1146 PRINTS Disease resistance protein signature 718 734 - -
Vimu4g01197 1146 Gene3D - 376 460 IPR042197 -
Vimu4g01197 1146 SUPERFAMILY "Winged helix" DNA-binding domain 446 551 IPR036390 -
Vimu4g01197 1146 SUPERFAMILY Toll/Interleukin receptor TIR domain 31 183 IPR035897 -
Vimu4g01197 1146 FunFam Disease resistance protein (TIR-NBS-LRR class) 37 207 - -
Vimu4g01197 1146 ProSiteProfiles TIR domain profile. 39 205 IPR000157 GO:0007165
Vimu4g01197 1146 SMART LRR_typ_2 841 864 IPR003591 -
Vimu4g01197 1146 SMART LRR_typ_2 818 840 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01197 Vimu-Chr4 10812972 10818452 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01197 719 883 WRKY Transcription Factor Family AT4G12020 34.337 5.75e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01197 - - vra:106778496 2144.78