Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01196 ATGGATTTGAGTAACTCCAAATATCTTACGGAGACTCCTGATTTTACTGGGGTCCCATACCTTGAGCGTCTGGATCTTTCAGGATGCACAGATTTATCATTTGTCCACCCATCAATTGGGCTTCTTCAACATCTTGCTTTCTTGAGTTTAAGAAATTGCAGCAATCTCATCAGCATCAAATTTGGCAATGGATTTAATGTAAGTTCCTTGAGAGTTCTACATTTCTCTGGTTGCACTAAACTTGAAAACACGCCAGACTTTACATGGACAACAAATCTTGAGTACCTGGACTTCGATGGATGTACAAGTTTATCCTCGGTTCATGAATCTATTGGAGTACTTGCAAAGCTTAAATTCTTGAGTTTGAGAGACTGCACAAGCCTTGTTGGTATACCTAGCAACAATAATATCATGGAATCTCTTCAGACTCTAGATTTCTCTGGCTGTTTTCAACTTACCGATTTGTCCATAGGGAGATCTTTCATTTCTTTATCCATGATCTCTTTGATTCTTTTGGACATAGGCTTCTGCAATCTTCTTGAAGTACCTGATGCTATTGGAGACTTGTTGTGTTTAGAAAGACTGAATCTGCAGGGAAACAATTTTTTTTTTATACCATCTTCAGTTAGCAAGCTTTATAGTCTAGCGTATTTAAACGTGTCCCATTGCCATAGGCTTCAACGTTTGCCTAAGCTTTCAGCAATAAGTTCTTCATCAACGGGAAGGTACTTCAAAACGGTATCTGGATCTCGTGATCATAGATCAGGCCTATATTTTTTCGATTGTCCCAAGATAGATTGGATGGATCCACTCGATTACCAAGAATTTAGATGGCTTGTAAGACTAGCTAAGAATCCATGTTATTTTCGGTGTGGCTTTGACATTGTTGTTCCTTGGGATTTGGAACTTCCATACTGGTTAAATCAAAGATTTAAAGGGGATTCGGTTATAAGGATAGTGGAATTTAATGAGGATGAGGACTGGATGGGCTTTGTTTTTTGTGTTGTATTTGAGCGAAACAATGGTCCTGTGGTTGGCAGGTCTTCATCACATCCATTTTATCTGTCTTTTGAAAGTGAAGACACAGAAGAATACTTCGACATGCCCATGAATTTGGAGCGTGACAAAGTGGTTGGATCAAAGCATCTTTGGATTATTTACATCTCTCGAGAACACTGTCACTTTGCGAAAACAGGAGCACATATCTCATTTAAAGCGCATCCAAGTCTTGAGATTAATGCATGGGGGATGAGTAGTATATTCCGGGAAGATGAAGAAATTAACTTTGATTGTAAAGGCGATGTGAACTTTGATTTTGTAGAAAAAAGCAGCACCAATTCTGGTCCTAAATTCCAGCTTCCTTACAATTGGTTGGTCACAGATGAAGATGAAGTTGAGAATATTCATGCAAAGGCAAAAGAGAACAATTTGTCTTATGCAGGCCTTTAA 1449 0.3865 MDLSNSKYLTETPDFTGVPYLERLDLSGCTDLSFVHPSIGLLQHLAFLSLRNCSNLISIKFGNGFNVSSLRVLHFSGCTKLENTPDFTWTTNLEYLDFDGCTSLSSVHESIGVLAKLKFLSLRDCTSLVGIPSNNNIMESLQTLDFSGCFQLTDLSIGRSFISLSMISLILLDIGFCNLLEVPDAIGDLLCLERLNLQGNNFFFIPSSVSKLYSLAYLNVSHCHRLQRLPKLSAISSSSTGRYFKTVSGSRDHRSGLYFFDCPKIDWMDPLDYQEFRWLVRLAKNPCYFRCGFDIVVPWDLELPYWLNQRFKGDSVIRIVEFNEDEDWMGFVFCVVFERNNGPVVGRSSSHPFYLSFESEDTEEYFDMPMNLERDKVVGSKHLWIIYISREHCHFAKTGAHISFKAHPSLEINAWGMSSIFREDEEINFDCKGDVNFDFVEKSSTNSGPKFQLPYNWLVTDEDEVENIHAKAKENNLSYAGL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01196 482 Gene3D Ribonuclease Inhibitor 161 246 IPR032675 -
Vimu4g01196 482 Gene3D Ribonuclease Inhibitor 88 160 IPR032675 -
Vimu4g01196 482 Gene3D Ribonuclease Inhibitor 1 87 IPR032675 -
Vimu4g01196 482 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 67 155 - -
Vimu4g01196 482 SUPERFAMILY L domain-like 2 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01196 Vimu-Chr4 10799346 10801670 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01196 66 230 WRKY Transcription Factor Family AT4G12020 35.542 3.25e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01196 - - var:108332841 877.47