Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01195 ATGAAGATTGTTGTGTTTAGGCTTGGCATCCTGTTAAGAGTGCTGGTTACACATTGCAGAAGAGGGGATTCTTGTTGCAATTCTGGTTTTGTTATGCAACTATATTTTGGTTTTGGGTTAGAGAGGAGATTTATATTTTTGCATTTGGAGGAAGATCCTGTTCACATATCTGTGGGGCTGTGTGCTTGTGGTTGGTTGCATCACCTTGTTCTGTGTTTTCCTTGTTGCGTTCTGCAGAGCTGTTCTTGGATTGAGTTTGGTGATGTTGAAGATGCCAAAGATGTTGGAGATGTTAGATATGTTGGAGATGTTGGAGATGAGAGAGACTATGAAGTTGGGTGGTGGAATGAGAAGAGAGAAGAGAGAAGAGAGAAGAGAGAAGAGAGAAAAAGCCAGGGAAAAACCACTACCTTGCTGGTGACGATGACAGACAAATTAGGGTTTAGAAGTCGATCATCCTCTACCAGTGTTATCTCATCAGAATCTGCTTCTTCTTCTTCCGGTCATTCCTCGGACACCATCCAAAACCAAGACCACAGGTACGATGTGTTCATCAGTTTCAGAGGTTCTGACACCCGCAACTCTTTCGTTGATCATCTCTACTCTCATCTTCTCCGGAAGGGTATTTTTGTCTTTAAAGACGACCACAAGCTCCGCAAAGGAGAATCCATTTCATCACAGCTTCTACAAGCAATCAGAGGTTCTCGAATTTCTATCATCGTCTTCTCCCAAGATTATCCTTCCTCCTCGTGGTGTTTGGACGAAATGGCCACTATAGCTGATTGCAAACAGCAATCTAACCAAACTGTTTTCCCTGTTTTCTATGATGTTAATCCATCTCACGTTAGACATCAGAATGGAGCGTATGAGAATGCTTTTGTTTTACACAGATCGAAATTTAAAGAAGAGCTAAACAAGGTCCTTCGATGGGAGAAAGCTATGACGTATTTGGCCAATTTAGCTGGTTGGGATATCGGAATCAAGCCAGAATTTGGTGAAATTGAAAATATTGTTCAAGCGGTAATACAAACACTGGGTCATAAATTCTCTGGGTTTGTTCATGATCTTATTGGGATACAACCACGCGTACAAGCATTAGAAGATAAATTAAGGTTAAGTTCAAAAACTGATGATGTTCAAGTTTTAGGAATTTGGGGAATGGGTGGAATAGGAAAGACGACTCATGCAGCTGTGCTATATGACAAAATCTCTCATAGGTTTGATGCTTCTTGTTTCATTGAGGATGTGAGCAAACTTTATAGAGATGGTGGCCATACTGCTGTTCAAAAGCAAATTATTCATCAAACTTTGGGTGAAAAATGTCTAGATACATATAGTCCTATTGAAATATCAGGGATTGTAAGAAATCGGCTACATAAGATAAAGGTTCTTGTAGTTCTTGACAATGTTAATGAATTAGAGCAATTGCAAGAACTGGCAATAAATTCCAAATTGCTTTCCAGAGGAAGTAGAATGATTATTATCAGTAGGGATGAGCATATTCTAAAAGTGTATGGAGCTGATGTAATACACAAAGTATCATTATTGAATGATAAAGATGCTCGTGAATTGTTTTATACAAAAGCGTTCAAAAGTGAAGAGCAAAACAGTAGTTGTGTGGAGTTGATTCCTGAGGTACTCAAATATTCCCAATGTCTTCCATTAGCAGTTAGAGTAATAGGGTCCTTCTTGTGTGGAAGAAATTCTAGTGAATGGAGGGATACTTTGGATAGATTTGAGAACAATCCAGATAATAATAAAATCATGGATGTTCTTCAAATAAGTTTTGATGGGCTACACTATATGGAAAAAGAAATATTTTTACACATTGCTTGTTTCTTTAAAGAAGAGAGAGAGGATTATGTTAAGCGAATTCTGGAGTGTTGTGGATTACACCCTCACATTGGAATTCCAAGAATGATTGAGAAATCGCTCATAACAATTAAGGATCAACAAATTCATATGCATGATATGTTGCAAGAATTGGGGAAGAAGATTGTTCGCAACCAATGTCCCGAAGAACCAGAATCATGGAGTAGAATATGGCTTTATGAAGATTTCTTTCATGTGTTGACGACCCAAACGCTTGACTTAGACTCAGACTACGTAACTCAAATTGGTGTGAGGCAACTAGACTTGACCTACTTGTGCCATCTCAACTCAACTTGTGTCCAGGGCGACTTAACCTATGCTCGATTCATCTCGAGTCAACACGGGTCAACATGGGCCACCTTAGCTATACCTTTGGGTGTTGCTCCCTCCACCACCCCATATAATGTTTGTTGGTGGGAGAAATCATTATCCAAGCGACACACTCAATATCAACAGCTTTTGTTGGTTGATATGGCACATAATGTAACTTGGATATTCTTGGAGCCATCTGTAACAGTGGTGAACACAGACTCGGTGTTTTCTTGGCTGGATAGTGTAATTGCCATACATCTTAACAACCAAAATAGCTTCTTTGTCTCTAGAGTCTTCACACCAAGAATTTTGTACAACACCATCAACAAACTCCTCCAGAGTCTGAAATTCCTCATGGTGAAAACTGTTGAGAACGAGTTTGATTGTGGTTATATGGAATTGCCATATGAATGCTCCATCAATGGGGAGAGAGAAAGAGAGAGATTATTCAGGATAGGAGCAACACCCTATACCTTTTACCACGCTAACTTGTGCCTTAGCCGACTCGAGTTGACTTGGGTTTGGGTCAACTTGGCTTCGCCTAGGTCTGAGACACTGATCAAACTTGGAACATATGATGTTAAAGCCATAGTTCTAAATAAAAAGGAAGCTATTTCAGAATTTAGCATTGATGGATTGTCAAAAATGAAGAAGCTTAGATTACTCATATTATATCATAAAAGCTTTTCGGGAAGCCTTAATTTTCTTTCTCAGATGCTGCGATATCTTTTGTGGCATGATTATCCTTTTGCTTCTTTGCCATCAAGTTTTGCAGCCCCTGGCCTTGTGGAATTGAACATGCCTGATAGTAGCATCAACTGCCTATGGGAAGGCCGCAAGACTGGACATCTTTTCCAGTGGAGGGAGTTTGACTTCCTTGGGGTGCATACCGTCCCCCGACCGGCACACGATGACCCGCTCTTGTCGTGGGAGCAGTTCGAGTTCGGCATTGGGACCTCGTGCCTAGTCCTCGGAGCCAATCCTTTTCCTGAGATTGTGGATCCATTTTGCCGACTTCTCTTGCCTACATTGTTCCATCAACTAGAGGTTGTTCACCTTGGAGACCTGATGCGGTTATGA 3264 0.4056 MKIVVFRLGILLRVLVTHCRRGDSCCNSGFVMQLYFGFGLERRFIFLHLEEDPVHISVGLCACGWLHHLVLCFPCCVLQSCSWIEFGDVEDAKDVGDVRYVGDVGDERDYEVGWWNEKREERREKREERKSQGKTTTLLVTMTDKLGFRSRSSSTSVISSESASSSSGHSSDTIQNQDHRYDVFISFRGSDTRNSFVDHLYSHLLRKGIFVFKDDHKLRKGESISSQLLQAIRGSRISIIVFSQDYPSSSWCLDEMATIADCKQQSNQTVFPVFYDVNPSHVRHQNGAYENAFVLHRSKFKEELNKVLRWEKAMTYLANLAGWDIGIKPEFGEIENIVQAVIQTLGHKFSGFVHDLIGIQPRVQALEDKLRLSSKTDDVQVLGIWGMGGIGKTTHAAVLYDKISHRFDASCFIEDVSKLYRDGGHTAVQKQIIHQTLGEKCLDTYSPIEISGIVRNRLHKIKVLVVLDNVNELEQLQELAINSKLLSRGSRMIIISRDEHILKVYGADVIHKVSLLNDKDARELFYTKAFKSEEQNSSCVELIPEVLKYSQCLPLAVRVIGSFLCGRNSSEWRDTLDRFENNPDNNKIMDVLQISFDGLHYMEKEIFLHIACFFKEEREDYVKRILECCGLHPHIGIPRMIEKSLITIKDQQIHMHDMLQELGKKIVRNQCPEEPESWSRIWLYEDFFHVLTTQTLDLDSDYVTQIGVRQLDLTYLCHLNSTCVQGDLTYARFISSQHGSTWATLAIPLGVAPSTTPYNVCWWEKSLSKRHTQYQQLLLVDMAHNVTWIFLEPSVTVVNTDSVFSWLDSVIAIHLNNQNSFFVSRVFTPRILYNTINKLLQSLKFLMVKTVENEFDCGYMELPYECSINGERERERLFRIGATPYTFYHANLCLSRLELTWVWVNLASPRSETLIKLGTYDVKAIVLNKKEAISEFSIDGLSKMKKLRLLILYHKSFSGSLNFLSQMLRYLLWHDYPFASLPSSFAAPGLVELNMPDSSINCLWEGRKTGHLFQWREFDFLGVHTVPRPAHDDPLLSWEQFEFGIGTSCLVLGANPFPEIVDPFCRLLLPTLFHQLEVVHLGDLMRL 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01195 1087 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 181 1012 IPR044974 GO:0006952
Vimu4g01195 1087 Gene3D - 515 600 IPR042197 -
Vimu4g01195 1087 Pfam NB-ARC domain 374 597 IPR002182 GO:0043531
Vimu4g01195 1087 Gene3D - 178 351 IPR035897 -
Vimu4g01195 1087 SMART till_3 180 320 IPR000157 GO:0007165
Vimu4g01195 1087 FunFam Disease resistance protein (TIR-NBS-LRR class) 177 347 - -
Vimu4g01195 1087 SUPERFAMILY Toll/Interleukin receptor TIR domain 170 323 IPR035897 -
Vimu4g01195 1087 ProSiteProfiles TIR domain profile. 179 345 IPR000157 GO:0007165
Vimu4g01195 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 610 IPR027417 -
Vimu4g01195 1087 Gene3D - 352 510 IPR027417 -
Vimu4g01195 1087 Pfam TIR domain 181 346 IPR000157 GO:0007165
Vimu4g01195 1087 MobiDBLite consensus disorder prediction 151 174 - -
Vimu4g01195 1087 SUPERFAMILY "Winged helix" DNA-binding domain 586 691 IPR036390 -
Vimu4g01195 1087 PRINTS Disease resistance protein signature 550 564 - -
Vimu4g01195 1087 PRINTS Disease resistance protein signature 381 396 - -
Vimu4g01195 1087 PRINTS Disease resistance protein signature 457 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01195 Vimu-Chr4 10791144 10798890 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01195 357 682 WRKY Transcription Factor Family AT5G45050 33.232 2.16e-46 180