Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01188 ATGTACCACCGTAGATTCAACAAGGTGGCTAACCCAGATGAGCCCGAGCCCGAGCTCGAGCCCACCTCAGAACCTGGGCCTGCTTCTCCTTCTTCCTGTGATGACACTAAAACAGAAGCACCGTCACCTAAGAAAAGGAGGGAGATGAAGAAGAGGGTGGTGACGATACCGATCGGTGACGTGGATGGATCTAAGAGCAAAGGAGAGACGTATCCACCGTCCGATTCATGGGCCTGGAGAAAGTACGGCCAAAAGCCCATCAAAGGCTCTCCTTACCCAAGCCGCCGTCGCCGGCGGGGAAAACCCGTAGGTGTTAAAATGCGGATCGGGGTTGTGTTGTGGTGGCAGTTTGGGTGTTGTGAGCGCACACGCGACCTACGAACCGCGGGATATTACCGATGCAGCAGTTCAAAAGGGTGTCCCGCAAGGAAGCAAGTGGAGCGAAGCCGTGTGGATCCCACAAAGCTCATAGTCACCTACGCCAACGACCACAACCACTCCGTCCCCCTCCCAAAATCCAATTCTTCCGCCGTTTCCGCCGCCTCCTCGCCGGCCGAGTCCGCCGCAAGGTTCCCGCCGGAGGAGGAGATGGCCGTGTTCTCGACTCACTCTGATTTTGAATTCGCCGGCGACGCCGCGGTTCTGCTCAGCCAGTACCACTTTCGGTGGTTCGATGACGTGGCGTCAACCGGCGTCCTCGAGAGCCCGATCTGCGGCGAGGTGGATGATGTGGCGATGCCGATGAGGGAGGAGGACGAGTCGCTCTTCGCCGATCTCGACGAGTTGCCGGAGTGCTCGGTGGTTTTCCGGCGGGGGAATATTCCGAGGAGCAGCGCGATCCGGTGCGGCGGCATCACAGGATAA 864 0.5891 MYHRRFNKVANPDEPEPELEPTSEPGPASPSSCDDTKTEAPSPKKRREMKKRVVTIPIGDVDGSKSKGETYPPSDSWAWRKYGQKPIKGSPYPSRRRRRGKPVGVKMRIGVVLWWQFGCCERTRDLRTAGYYRCSSSKGCPARKQVERSRVDPTKLIVTYANDHNHSVPLPKSNSSAVSAASSPAESAARFPPEEEMAVFSTHSDFEFAGDAAVLLSQYHFRWFDDVASTGVLESPICGEVDDVAMPMREEDESLFADLDELPECSVVFRRGNIPRSSAIRCGGITG 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01188 287 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 16 267 IPR044810 GO:0003700
Vimu4g01188 287 MobiDBLite consensus disorder prediction 1 101 - -
Vimu4g01188 287 SUPERFAMILY WRKY DNA-binding domain 69 94 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu4g01188 287 MobiDBLite consensus disorder prediction 1 15 - -
Vimu4g01188 287 Pfam WRKY DNA -binding domain 75 94 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g01188 287 Pfam WRKY DNA -binding domain 114 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g01188 287 MobiDBLite consensus disorder prediction 169 183 - -
Vimu4g01188 287 Gene3D WRKY domain 61 170 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu4g01188 287 MobiDBLite consensus disorder prediction 169 190 - -
Vimu4g01188 287 SMART WRKY_cls 73 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g01188 287 SUPERFAMILY WRKY DNA-binding domain 113 169 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu4g01188 287 ProSiteProfiles WRKY domain profile. 74 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01188 Vimu-Chr4 10676818 10678665 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01188 3 274 WRKY Transcription Factor Family AT3G58710 44.138 9.48e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu4g01188 WRKY 4.8e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01188 - - vra:106778551 453.751