Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01185 ATGGCCTCTATGCCGCTGGGGCCGCAGCAACAGCTTCAACCACCGCAAGTGGCAACTCCGCCGCAACAACTGCCGCAGGCGGAGAATGACCCTATGCAAGTGGACTCTCGCGGCGGCTCTGACGCCGCCTCCAATAAGGTAATTTCTGCTCTCGGCCATTTCCTCACTGTGCGCAACGGCGCCGTTTATGGTCCTCGGATCGTCATTGATCCGCTGGACATGCCTCCGGACGAACGCAGCTTACTGCGATCTGCTCGTTTCCGGCATTGGTTTTTCTCGCTTGGAGGTCGCCGGAATTTTTATAACGTTGCCTTCAAGGAATGGCTTTTACTTTTTTGGCTTGTGGAATTGGAAATTTCTGTTGAAAAGTTGAAGTTTGAGGAGCTTTCGGAAATGTCTGCTCCCGTCGCAGAGGGTAATGAGGCACATGGACTCACTGGTCACATAATATCAACCACAATTGGTGGCAAAAATGGTGAACCTAAACGAACTATCAGTTACATGGCCGAACGTGTTGTTGGCACTGGATCATTTGGAATTGTTTTCCAGGCAAAGTGCTTGGAGACCGGGGAGGCAGTGGCCATAAAGAAGGTCTTGCAGGACAGGCGATACAAAAATCGGGAACTGCAGTTAATGCGCATGATGGATCACCCAAATGTAGTTTCCCTGAGGCACTGTTTCTTCTCTACAACAAGTCGAGATGAACTTTTTCTGAACTTGGTGATGGAATATGTCCCTGAGACGATCTTCCGTGTTATAAAGCACTACAGTAGTATAAACCAGAGAATTCCCCTGATCTATGTGAAATTATATACATATCAAATCTTTAGGGGACTGGCATATATCCACACCGTACCAGGAGTCTGCCACAGGGATGTAAAGCCTCAAAATCTTTTGGTGGATCCACTCACACATCAAGTCAAGCTTTGCGATTTTGGGAGTGCAAAAGTTCTGGTGAAGGGTGAATCAAACATCTCATACATATGTTCACGGTACTATCGTGCTCCAGAACTAATATTTGGTGCGACAGAATACACAACTTCTATTGATATCTGGTCAGCTGGTTGTGTCCTTGCTGAACTTCTCCTGGGTCAGCCTTTGTTCCCGGGAGAAAATCAGGTCGACCAACTTGTTGAAATTATCAAGGTTCTTGGCACTCCTACTCGAGAAGAAATTCGATGCATGAACCCTAATTATACAGATTTCAGATTCCCCCACATCAAAGCTCATCCTTGGCACAAGGTTTTTCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCAAAACTTCGTTACAGCGCAGTGGAAGCATTGGCACATCCTTTCTTTGACGAGCTTCGCGAGCCCAATGCTCGACTACCAAATGGTCGTTCATTGCCTCCACTTTTTAACTTCAAACAGGAATTAGATGGAGCTCCTCCTGAACTTCTTCCTAAGCTCATCCCGGAGCATGCCAGACGGCAAACCGGTTTTGGCTTGCCGGACACCCAAACTCAAATGTAA 1527 0.4722 MASMPLGPQQQLQPPQVATPPQQLPQAENDPMQVDSRGGSDAASNKVISALGHFLTVRNGAVYGPRIVIDPLDMPPDERSLLRSARFRHWFFSLGGRRNFYNVAFKEWLLLFWLVELEISVEKLKFEELSEMSAPVAEGNEAHGLTGHIISTTIGGKNGEPKRTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRMMDHPNVVSLRHCFFSTTSRDELFLNLVMEYVPETIFRVIKHYSSINQRIPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPHIKAHPWHKVFHKRMPPEAIDLASRLLQYSPKLRYSAVEALAHPFFDELREPNARLPNGRSLPPLFNFKQELDGAPPELLPKLIPEHARRQTGFGLPDTQTQM 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01185 508 ProSiteProfiles Protein kinase domain profile. 167 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01185 508 Gene3D Phosphorylase Kinase; domain 1 152 246 - -
Vimu4g01185 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
Vimu4g01185 508 FunFam Glycogen synthase kinase-3 beta 151 246 - -
Vimu4g01185 508 ProSitePatterns Protein kinases ATP-binding region signature. 173 197 IPR017441 GO:0005524
Vimu4g01185 508 MobiDBLite consensus disorder prediction 1 41 - -
Vimu4g01185 508 Pfam Protein kinase domain 167 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01185 508 SUPERFAMILY Protein kinase-like (PK-like) 166 474 IPR011009 -
Vimu4g01185 508 FunFam Shaggy-related protein kinase kappa 247 494 - -
Vimu4g01185 508 SMART serkin_6 167 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01185 508 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 131 496 - -
Vimu4g01185 508 CDD STKc_GSK3 162 454 IPR039192 -
Vimu4g01185 508 Gene3D Transferase(Phosphotransferase) domain 1 247 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01185 Vimu-Chr4 10617466 10622147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01185 171 481 MAP Kinase Gene Family AT3G59790 36.503 5.97e-57 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vimu4g01185 Pkinase 9.1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01185 K14502 - gmx:100788319 721.85