Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01184 ATGACACACTTCTCACGTACCCTCTTTTTTGTTCTTTCTCTCCTTTCTTCTTCAACCAATGCACAACTTTCTACCAACTTCTACGATAAAACTTGTCCCAATCTTCAAACCATTGTCAGAAATTCAATGGAGCAAGCCATCAATGGAGAACCTCGACTTGGAGCCTCTATACTCCGATTGTTCTTCCACGATTGTTTTGTGAATGGCTGCGATGCATCAGTTTTGTTGGATGACACTGGCACATTTGTTGGTGAGAAAAATGCAGCACCAAACAGAAATTCAGTGAGGGGTTACGAAGTGATAGATGGCATTAAAACCAAGGTTGAAGCTTCCTGCAATGGCATTGTCTCTTGTGCTGATATTCTGGCACTTGCAGCAAGAGATGGAGTAGTTCTGCTTGGAGGACCTTCATGGAAAGTGGCTCTAGGTCGAAGAGACGCGACAACAGCAAGCCAAAGCGCAGCCAACGCCCACCTCCCTTCTCCGTTCTCCGACCTATCCACACTCACCAGCGCCTTCGCCGCCAAAGGCTTGAGCGCGCGTGACCTCACCGTGCTCTCCGGCGGCCACAGCATAGGCCAAGCGCAGTGCCAATTTTTCAGAGCTCGCATCTACAACGGAACCAACATCGACACCAGCTTCGCCGCCTCAAGAAGAAGCATTTGCCCTTCCTCCGGTGGGGACACCGACTTGTCCCCTCTGGACTCCCTCACTCCCATTCATTTCGACAACAACTACTTCTCCGAGCTGGTGGCTGGCCGTGGCCTTCTCATCTCAGATCAAGTGCTCTTCGATGGTGGCTCTCAAGACCCTTTGGTCAGAATTTACAGCGACAATAATGCTGTGTTTTTTCGTGATTTTGGTGAAGCCATGATTAAGATGGGTGATATCACTCCTCTCACTGGAACTGCTGGTGAGATCAGAACTAATTGCAGGGTTGTCAATTGA 948 0.4916 MTHFSRTLFFVLSLLSSSTNAQLSTNFYDKTCPNLQTIVRNSMEQAINGEPRLGASILRLFFHDCFVNGCDASVLLDDTGTFVGEKNAAPNRNSVRGYEVIDGIKTKVEASCNGIVSCADILALAARDGVVLLGGPSWKVALGRRDATTASQSAANAHLPSPFSDLSTLTSAFAAKGLSARDLTVLSGGHSIGQAQCQFFRARIYNGTNIDTSFAASRRSICPSSGGDTDLSPLDSLTPIHFDNNYFSELVAGRGLLISDQVLFDGGSQDPLVRIYSDNNAVFFRDFGEAMIKMGDITPLTGTAGEIRTNCRVVN 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01184 315 ProSiteProfiles Plant heme peroxidase family profile. 22 315 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu4g01184 315 ProSitePatterns Peroxidases active site signature. 54 65 IPR019794 GO:0004601
Vimu4g01184 315 PANTHER PEROXIDASE 72-RELATED 20 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu4g01184 315 Gene3D - 26 312 - -
Vimu4g01184 315 FunFam Peroxidase 160 294 - -
Vimu4g01184 315 PRINTS Haem peroxidase superfamily signature 235 250 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu4g01184 315 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu4g01184 315 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu4g01184 315 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu4g01184 315 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu4g01184 315 Gene3D Peroxidase, domain 2 160 294 - -
Vimu4g01184 315 SUPERFAMILY Heme-dependent peroxidases 22 315 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu4g01184 315 Pfam Peroxidase 39 278 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu4g01184 315 FunFam Peroxidase 26 170 - -
Vimu4g01184 315 CDD secretory_peroxidase 22 314 IPR033905 GO:0004601|GO:0042744
Vimu4g01184 315 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Vimu4g01184 315 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu4g01184 315 PRINTS Plant peroxidase signature 289 302 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu4g01184 315 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu4g01184 315 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu4g01184 315 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu4g01184 315 PRINTS Plant peroxidase signature 249 266 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu4g01184 315 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu4g01184 315 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu4g01184 315 PRINTS Plant peroxidase signature 233 248 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01184 Vimu-Chr4 10593519 10595224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01184 21 315 Peroxidase AT5G05340 62.626 3.85e-137 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01184 K00430 - gmx:100806309 486.878