Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01182 ATGGACGAAGATTATGACTACAGAAGGAAGGCCAAGATTGCACTCATCGCCATTTTGGTCTTCGCTTCCCTCGCCATCTTTGCCTTGTTCGTTGCCTTTGCTTACTACTGCTACATCCTCAACAAGGTCTCCAACCGCCGTAAAAGCCTCAAAAAAGGTTTGGCTCTCTTTCGGAAATGTGCTGAACTTCAATGTTCGCTTTGTGTTCCTCTGCGAACGCCTGAGATTTTGCTTGATTTTATATTAGTTGAAGACGCAAACCTTAATGAGAATAGTGACTTTGCAAATCTGCAAGTTATTGCCGAGAAAGGACTGCAGGTGTTCACTTTCAAGCAGCTGCATTCTGCAACAGGGGGCTTCAGCAAGTCGAATGTCATTGGTCATGGTGGATTTGGACTTGTTTACCGGGGAGTGCTCAATAATGGCAGGAAAGTTGCCATTAAATTCATGGATCAAGCTGGAAAGCAGGGGGAAGAAGAATTTAAAGTAGAGGTGGAATTGCTTAGCCGGTTGCATTCACCATATCTGCTGGCATTGCTTGGATACTGCTCTGATAGTAATCATAAATTGCTGGTGTATGAATTTATGGCTAATGGTGGACTGCAGGAACATCTTTATCCTGTTAACAGTAAATATGCACTGACAGGGCATTTAACCACAAAATCAGATGTGTACAGTTATGGTGTCGTACTTTTGGAGCTGCTCACTGGCCGAGTGCCAGTAGATATGAAGAGACCTCCCGGAGAAGGTGTTCTTGTTTCCTGGGCTCTGCCTCTTTTGACTGATAGGGAAAAGGTTGTAAAGATTATGGATCCTTCATTGGAGGGACAGTACTCTATGAAAGAGGTTGTCCAGGTGGCTGCAATTGCTGCAATGTGTGTGCAACCCGAGGCAGACTATCGTCCTCTCATGGCAGATGTTGTGCAGTCATTGGTTCCACTGGTTAAGACTCAAAGGTCCCCTTCAAAGGTGGGAAGCTGCTCTAGTTTCCACTCTCCCAAGTTGTCCCCCGGCCCAACATCTAGTTAG 1029 0.4558 MDEDYDYRRKAKIALIAILVFASLAIFALFVAFAYYCYILNKVSNRRKSLKKGLALFRKCAELQCSLCVPLRTPEILLDFILVEDANLNENSDFANLQVIAEKGLQVFTFKQLHSATGGFSKSNVIGHGGFGLVYRGVLNNGRKVAIKFMDQAGKQGEEEFKVEVELLSRLHSPYLLALLGYCSDSNHKLLVYEFMANGGLQEHLYPVNSKYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRPPGEGVLVSWALPLLTDREKVVKIMDPSLEGQYSMKEVVQVAAIAAMCVQPEADYRPLMADVVQSLVPLVKTQRSPSKVGSCSSFHSPKLSPGPTSS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01182 342 MobiDBLite consensus disorder prediction 320 342 - -
Vimu4g01182 342 SUPERFAMILY Protein kinase-like (PK-like) 104 313 IPR011009 -
Vimu4g01182 342 Pfam Protein tyrosine and serine/threonine kinase 216 311 IPR001245 GO:0004672|GO:0006468
Vimu4g01182 342 Pfam Protein tyrosine and serine/threonine kinase 123 206 IPR001245 GO:0004672|GO:0006468
Vimu4g01182 342 Gene3D Transferase(Phosphotransferase) domain 1 195 327 - -
Vimu4g01182 342 Gene3D Phosphorylase Kinase; domain 1 83 194 - -
Vimu4g01182 342 ProSiteProfiles Protein kinase domain profile. 120 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01182 342 FunFam Serine/threonine-protein kinase PBS1 87 195 - -
Vimu4g01182 342 ProSitePatterns Protein kinases ATP-binding region signature. 126 148 IPR017441 GO:0005524
Vimu4g01182 342 PANTHER OS07G0668900 PROTEIN 210 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01182 Vimu-Chr4 10586522 10590643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01182 200 337 Receptor kinase-like Gene Family AT3G58690 78.261 1.64e-66 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vimu4g01182 PK_Tyr_Ser-Thr 8.3e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01182 - - gmx:100809555 318.546