Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01178 ATGTCAGGAGTAGGACCTCTCTCTCAGGATTGGGAACCAGTGGTGCTTCGCAAGAAAGCCCCCACTTCCGCCGCCCGCAAGGATGAGAAAGCCGTCAACGCCGCTCGCCGCACCGGCGCCGACATCGACACCATAAAAAAATATAATGCTGGAACAAACAAATCTGCTTCTAGTAGCACTTCATTGAATACTAAGAGGCTGGATGATGATACCGAAAATCTAGCTCATGATCGGGTACCAACTGAACTGAAGAAAGCTATAATGCAGGCCCGGATGGACAAGAAACTAACTCAGTCTCAGCTTGCTCAATTGATCAATGAGAAGCCTCAAATAATCCAGGAGTACGAGTCGGGGAAGGCCATTCCAAACCAGCAGATAATTGGCAAGTTGGAGAGAGCCCTTGGTGCCAAACTGCGTGGCAAGAAATGA 429 0.4918 MSGVGPLSQDWEPVVLRKKAPTSAARKDEKAVNAARRTGADIDTIKKYNAGTNKSASSSTSLNTKRLDDDTENLAHDRVPTELKKAIMQARMDKKLTQSQLAQLINEKPQIIQEYESGKAIPNQQIIGKLERALGAKLRGKK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01178 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Vimu4g01178 142 MobiDBLite consensus disorder prediction 1 74 - -
Vimu4g01178 142 FunFam Multiprotein bridging factor 1 71 142 - -
Vimu4g01178 142 Coils Coil 87 107 - -
Vimu4g01178 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Vimu4g01178 142 CDD HTH_XRE 85 135 IPR001387 -
Vimu4g01178 142 SMART mbf_short4 86 141 IPR001387 -
Vimu4g01178 142 SUPERFAMILY lambda repressor-like DNA-binding domains 80 138 IPR010982 GO:0003677
Vimu4g01178 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 9 142 - -
Vimu4g01178 142 Gene3D - 71 142 IPR010982 GO:0003677
Vimu4g01178 142 Pfam Helix-turn-helix 87 137 IPR001387 -
Vimu4g01178 142 MobiDBLite consensus disorder prediction 48 64 - -
Vimu4g01178 142 MobiDBLite consensus disorder prediction 21 43 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01178 Vimu-Chr4 10544750 10547453 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Vimu4g01178 MBF1 8.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01178 K03627 - gmx:100500420 263.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01178 4 10544750 10547453 Vimu4g01178 4 10544750 10547453 ECH
Vimu4g01178 4 10544750 10547453 Vimu5g01221 5 21493293 21495717 PCT