Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01176 ATGTCCCTTAAGTGTGCGATTGATCTGTGCATACCAGATATCATACACAACTATGGCCAATCTATGCCACTCTCAAAACTCATCGCTTCACTTCCAATTCACCCTTCAAAGACTTGCTTTGTTTCCCGTTTGATGCAAATCTTGGTCCATTCTGGTTTTTTCTCTCAACACAGTGACGATAGTAAGCAAGAAGTGAGCTATGCACTAACTGGTGCATCAGAACTTCTCCTAAGGAGCACCCCTTTATTCTCCACTTGGTTCACAAATGATGAGCCTACACCATTTCATGCACAGAATGGGATGACTTTTTGGGACTATGCTGGCCGTGAGCCCAAACTCAATCACCTTTTCAATGATGCCATGTCAAATGACACTCGATTGATTTCCAATGTGATGATTGAGAAGTGCAAGGGAGTGTTGGAAGGATTAGAGTCTTTGGTTGATGTTGGGGGAGGGACAGGAACCATGGTTAAGGCCATTGCCCAGTCTTTTCTGTTGTGA 501 0.4391 MSLKCAIDLCIPDIIHNYGQSMPLSKLIASLPIHPSKTCFVSRLMQILVHSGFFSQHSDDSKQEVSYALTGASELLLRSTPLFSTWFTNDEPTPFHAQNGMTFWDYAGREPKLNHLFNDAMSNDTRLISNVMIEKCKGVLEGLESLVDVGGGTGTMVKAIAQSFLL 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01176 166 PANTHER O-METHYLTRANSFERASE 1 161 IPR016461 GO:0008168
Vimu4g01176 166 Gene3D Vaccinia Virus protein VP39 122 162 IPR029063 -
Vimu4g01176 166 Pfam Dimerisation domain 1 49 IPR012967 GO:0046983
Vimu4g01176 166 Gene3D - 93 121 - -
Vimu4g01176 166 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 166 IPR016461 GO:0008168
Vimu4g01176 166 Pfam O-methyltransferase domain 89 164 IPR001077 GO:0008171
Vimu4g01176 166 Gene3D - 1 76 IPR036388 -
Vimu4g01176 166 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 67 163 IPR029063 -
Vimu4g01176 166 SUPERFAMILY "Winged helix" DNA-binding domain 1 79 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01176 Vimu-Chr4 10523474 10524033 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01176 1 164 Monolignol Biosynthesis Gene Families AT5G54160 26.984 8.76e-16 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01176 - K16040 pvu:PHAVU_011G122000g 261.922