Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01174 ATGGTCGGAATTTCTTTCGAGAAGGCTTTTCATGAATTTCCATCAAATCTAAGGGTACTCGCGGTTGACACTAACTCTACTGTTCTTGAATTCATCAAGCAGATGTGTAAGGAATATTGCTATGAAGTTATCACATGCACAGAATCGGTACTTGCTACTGAGATTTTACAGGAAAGAAAAGTGGGTATTGATTTGGTACTGATGGAGGTTCATATGCCAAAGATGAATGGCTATGAATTCTTACTTGCCAACCAAGAAATTGATGTTCCTATCATCATGATGTCTTGGGATGATAACAAGAAATCTGTAATGAAGAGTATAAAACTTGGAGGCTGTGATTATTGGATCAAGCCTTTGCATGAGGATCGACTCAAGAACATGTGGACACATGTTGTTAGGAAGTCCATGAGTGAGAATAGGATGCGAAAAGATCATTTTAGCGGGAATTCTGAATTTGTTTCTTCTTCTACTCTTGAAATTTCAAGAAAAGTTGATAATGTTGGTGAATCACATTCGAGAAAGAAGTCTCGTATGGTATGGACATCAGAACTGCATGGTAAATTTGTCAAAGCTGTCAATCAAATTGGACTTGCTAATGCTGTGCCAAAGAAAGTTCTTGAGCTCATGAATATGCCTGGTTTGACAAGAAACCATGTTGGTAGTCACTTACAGAAATATAGAAATGCTTTGAAGAGAAAACCTCAGCAATCTGCTACAGATATACCACTGCATAACCATCTTCATGCAGAAGAAGCTTTGAATATGGCACTTGATCACCCAATGGCTCCCTATACTACTAACTTTGTTTTTCCACAGTCCTCGGAAACTATGCCTAACAGTGTTTCAGTAGATACATTGCAACAACAGCAGCAAATGCAACAGTGGATGGAAGCTGCAAAGCTTGTCAAAGATACCGAGATGAAAGCACCAACTCCCACAACAGTTCTTTATCCTAACCTTGGAGGAAACATACATATTTTTAAGGCAGTGACTCCTTGTGCAATCTTTGATAACATGGGCGACACTGCACCTACTTCCGAAAATCACATAGGAAAGACCTTCCAGAAGGCTTTTTGTGAATTTCCATCAAATCTGAGGGTACTAGCTGTTGACACTAACTCTACTGTTCTTGAATTCATCAAGAAGATGTGTAAGGAATATTGCTATGAAGTTATCACATGCACAGAATCGCTACTTGCTACTGAAATTTTGCAGGAAAGAAAAGTGGGGATTGATTTAGTACTGATGGAGGTTCATATGCCAAAGATGGATGGCTATGAATTCTTACTTGCCAACCAAGAAATTGATGTTCCTATCATCATGATGTCTTGGGATGATAACAAGAAATCTGTAATGAAGAGTATAAAACTTGGAGGCTGTGATTATTGGATCAAGCCTTTGCATGAGGATCGACTCAAGAACATGTGGACACATGTTGTTAGGAAGTCCATGAGTGAGAATAGGATGCGAAAAGATCATTTTAGCGGGAATTCTGAATTTGTTTCTTCTTCTACTCTTGAAATTTCAAGAAAAGTTGATAATGTTGGTGAATCACATTCGAGAAAGAAGTCTCGTATGGTATGGACATCAGAACTGCATGGTAAATTTGTCAAAGCTGTCAATCAAATTGGACTTGCTAATGCTGTGCCAAAGAAAGTTCTTAAGCTCATGAATATGCCTGGTTTGACAAGAAACCATGTTGGTAGTCACTTACAGAAATATAGAAATGCTTTGAAGAGAAAACCTCAGCAATCTGCTACAGATATACCACTGCATAACCATCTTCATGCAGAAGAAGCTTTGAATATGGCACTTGATCACCCAATGGCTCCCTATACTACTAACTTTGTTTTTCCACAGTCCTCGGAAACTATGCCTAACAGTGTTTCAGTAGATACATTGCAACAACAGCAGCAAATGCAGCAGTGGATGGAGTCTTTCTTTTTATGA 1950 0.3862 MVGISFEKAFHEFPSNLRVLAVDTNSTVLEFIKQMCKEYCYEVITCTESVLATEILQERKVGIDLVLMEVHMPKMNGYEFLLANQEIDVPIIMMSWDDNKKSVMKSIKLGGCDYWIKPLHEDRLKNMWTHVVRKSMSENRMRKDHFSGNSEFVSSSTLEISRKVDNVGESHSRKKSRMVWTSELHGKFVKAVNQIGLANAVPKKVLELMNMPGLTRNHVGSHLQKYRNALKRKPQQSATDIPLHNHLHAEEALNMALDHPMAPYTTNFVFPQSSETMPNSVSVDTLQQQQQMQQWMEAAKLVKDTEMKAPTPTTVLYPNLGGNIHIFKAVTPCAIFDNMGDTAPTSENHIGKTFQKAFCEFPSNLRVLAVDTNSTVLEFIKKMCKEYCYEVITCTESLLATEILQERKVGIDLVLMEVHMPKMDGYEFLLANQEIDVPIIMMSWDDNKKSVMKSIKLGGCDYWIKPLHEDRLKNMWTHVVRKSMSENRMRKDHFSGNSEFVSSSTLEISRKVDNVGESHSRKKSRMVWTSELHGKFVKAVNQIGLANAVPKKVLKLMNMPGLTRNHVGSHLQKYRNALKRKPQQSATDIPLHNHLHAEEALNMALDHPMAPYTTNFVFPQSSETMPNSVSVDTLQQQQQMQQWMESFFL 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01174 649 FunFam Two-component response regulator 171 233 - -
Vimu4g01174 649 SMART REC_2 365 476 IPR001789 GO:0000160
Vimu4g01174 649 SMART REC_2 17 128 IPR001789 GO:0000160
Vimu4g01174 649 Pfam PCO_ADO 285 339 IPR012864 GO:0016702
Vimu4g01174 649 Gene3D - 16 147 - -
Vimu4g01174 649 Gene3D - 364 495 - -
Vimu4g01174 649 SUPERFAMILY CheY-like 15 141 IPR011006 -
Vimu4g01174 649 CDD REC_typeB_ARR-like 367 480 - -
Vimu4g01174 649 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 520 579 IPR017930 -
Vimu4g01174 649 Pfam Myb-like DNA-binding domain 525 575 IPR001005 -
Vimu4g01174 649 Pfam Myb-like DNA-binding domain 177 227 IPR001005 -
Vimu4g01174 649 SUPERFAMILY CheY-like 363 489 IPR011006 -
Vimu4g01174 649 Gene3D - 520 581 - -
Vimu4g01174 649 Gene3D - 172 233 - -
Vimu4g01174 649 SUPERFAMILY Homeodomain-like 521 580 IPR009057 -
Vimu4g01174 649 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 172 231 IPR017930 -
Vimu4g01174 649 ProSiteProfiles Response regulatory domain profile. 366 480 IPR001789 GO:0000160
Vimu4g01174 649 PANTHER TWO-COMPONENT RESPONSE REGULATOR 365 598 IPR045279 GO:0009736
Vimu4g01174 649 FunFam Two-component response regulator 519 581 - -
Vimu4g01174 649 SUPERFAMILY Homeodomain-like 173 232 IPR009057 -
Vimu4g01174 649 Pfam Response regulator receiver domain 367 475 IPR001789 GO:0000160
Vimu4g01174 649 Pfam Response regulator receiver domain 19 127 IPR001789 GO:0000160
Vimu4g01174 649 ProSiteProfiles Response regulatory domain profile. 18 132 IPR001789 GO:0000160
Vimu4g01174 649 NCBIfam myb-like DNA-binding domain, SHAQKYF class 175 228 IPR006447 GO:0003677
Vimu4g01174 649 NCBIfam myb-like DNA-binding domain, SHAQKYF class 523 576 IPR006447 GO:0003677
Vimu4g01174 649 CDD REC_typeB_ARR-like 19 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01174 Vimu-Chr4 10496844 10507861 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01174 356 580 Response Regulator Gene Family AT2G25180 41.633 2.79e-48 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vimu4g01174 Response_reg 3.5e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01174 - K14491 vra:106778511 585.874