Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01170 ATGGATGAGAGAATTTGTATATCTGAGGAAGAAAAGAGTGAAAGTAGCAGACCCTCTTCTGCAAGTCTTAGAAGAAAACGTTCATTCTTCGATTTGAATGAAGAAGCTGTGGATGATGGAGATGGTAGCACCAGTGATGATCCCATCAGTAACAATGAGATATCATCTCAAGAGGGTAATTTGAGTAGTAACAATAACTCAAGTGATGAAGGGAAAGAGCGTGGAACTGCTGTTAGGCAATATGTTCGGTCCAAAATGCCAAGACTCCGTTGGACCCCTGATCTTCATTTAGCTTTCGTGCATGCTGTTGACAGGCTTGGTGGACAAGAAAGAGCAACCCCCAAGTTGGTTCTCCAGTTGATGAATGTGAGAGGACTTAGCATTGCACATGTAAAGAGCCATTTACAGATGTATCGAAGTAAAAAGCTTGATGAGTCTGGCCAAGGTAAAATTTTTCAGAACCTTAATATAGTAAAACCATGTTTTGATCGAGCTCATTGCACGTACCATGCCTATTACATTACATGCATGATGATTCAGTTCACTAATAGGGCAATGCAGGGAAGACACAGTATTTTCGATATGTATGGAAGACTTAATGCCCCACGACACTTTGTGGTTGATAATAGAAATTATGTTCCATCATCTCTGCTCATGGAACAATCACCTTATCAGATCAGTGCTCACTCTTCAAGATTACACCCGACAGGGTTTTTCAATAATCACCACATAAGATCTAGTTCAATGTGGGACAAAGATATGTGTAATTATCAGTATCAGCGTAGTTCTTGCAGTCCTAACTTCACTGCCCACGCCAAGTTTGATGCCGAGGTTGGTGATGTGAAAAATGGAATGGCAGAATTCCTTAACGAGGTGGAAGAAAGGAAGCAAGGTGAAATGAAAGATGAATATGAGAAGGTGAATTTAAGTAAAGATTCAAGAAAAGTTAAGAAAGATGATGCAGAAATGAAAATCATAAAGACGATAGCCATGTTGAGAGTTTTTGTTTACAAAGGAGTCGTTTGGGCTGAGTACTTATTAGGATCTTAA 1050 0.3962 MDERICISEEEKSESSRPSSASLRRKRSFFDLNEEAVDDGDGSTSDDPISNNEISSQEGNLSSNNNSSDEGKERGTAVRQYVRSKMPRLRWTPDLHLAFVHAVDRLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQGKIFQNLNIVKPCFDRAHCTYHAYYITCMMIQFTNRAMQGRHSIFDMYGRLNAPRHFVVDNRNYVPSSLLMEQSPYQISAHSSRLHPTGFFNNHHIRSSSMWDKDMCNYQYQRSSCSPNFTAHAKFDAEVGDVKNGMAEFLNEVEERKQGEMKDEYEKVNLSKDSRKVKKDDAEMKIIKTIAMLRVFVYKGVVWAEYLLGS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01170 349 MobiDBLite consensus disorder prediction 1 21 - -
Vimu4g01170 349 SUPERFAMILY Homeodomain-like 85 141 IPR009057 -
Vimu4g01170 349 MobiDBLite consensus disorder prediction 44 71 - -
Vimu4g01170 349 Pfam Myb-like DNA-binding domain 89 139 IPR001005 -
Vimu4g01170 349 Gene3D - 86 143 - -
Vimu4g01170 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 64 220 IPR046955 GO:0003700
Vimu4g01170 349 MobiDBLite consensus disorder prediction 1 76 - -
Vimu4g01170 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 143 IPR017930 -
Vimu4g01170 349 NCBIfam myb-like DNA-binding domain, SHAQKYF class 87 142 IPR006447 GO:0003677
Vimu4g01170 349 FunFam Myb family transcription factor 85 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01170 Vimu-Chr4 10432260 10435857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01170 78 148 G2-like Transcription Factor Family AT2G42660 78.873 2.07e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu4g01170 Myb_DNA-binding 1.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01170 - - vra:106778505 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01170 4 10432260 10435857 Vimu4g01170 4 10432260 10435857 ECH