Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01165 ATGAAGCTATTGGTGGGACTTCTACTTTCAAGGCTGGACCAAACACCGCCTTTGTCTGTTGGATATGGTCTTTTTGCTGTAGTGTGGTGGATTCAACTTGAATGCTCGATTCAATGTAGGGCTGTACGTGCTATGAATGAAACTCTGAAGCAAAATCGTCTCTTGAGAGAACGAGGGGATGATAACTCTACAAACAATAACAGTAGTGATGCAAATCTTCAGAAAAATGTGTCAAATTTTCATCTTGATGGTCATGATGCACTATATTCTCGTCAACATGACCAAGGAAACTCACAAAAGGCAATGTCATTACCATCTTCACCTCATGATTATAGAGGTCATTCTTCGGAGAGAATTGGACCGTCTAGACAAGGAGTGAATGATGAAATGGAGTCAACTTGGAATAAAGTACTGGAATCTCCAATGTTCAATAATAAACCTCTTTTACCATACGAAAAATGGAATATTGACTTCTCTGAATTGACTGTTGGAACTCGGGTAGGGATTGGTTTCTTTGGAGAGGTTTTCCGTGGAATATGGAATGGCACAGATGTTGCAATCAAGGTTTTTCTAGAGCAAGATTTAACTGCTGAAAATATGGAAGATTTTTGCAATGAGATATCTATTCTGAGCCGACTCCGACATCCTAATGTTATATTGTTTCTCGGTGCATGCACAAAACCTCCACGGCTGTCAATGGTTACAGAATATATGGAATTGGGATCGTTGTACTACTTGATACATTTAAGTGGTCAAAAGAAAAAGCTTAATTGGCGGAGAAGACTAAGGATGTTACGTGACATATGCAAAATAACTTGCTTGTGTAGGGGTTTGATGTGCATACATCGAATGAAGGTTGTTCACCGTGATCTGAAAAGCGCAAATTGTCTGGTGAATAAGCATTGGACTGTGAAAATATGTGATTTTGGGCTTTCAAGATTAATGACAGAGTCTCCTATGAGAGATTCTTCCTCGGCTGGAACTCCAGAATGGATGGCTCCTGAGCTCATTCGAAACGAACCATTCACCGAAAAATGTGATATCTTTAGCCTTGGGGTGATAATGTGGGAACTATGCACATTGAGCAGACCATGGGAAGGAATACCACCTGAGAGGGTGGTCTATTCCGTTGCAAATGAGGCTTCCAGATTGGAAATACCAGAAGGCCCTCTAGGAAGGCTTATTTCAGATTGTTGGGCAGAATCCCATGAGCGGCCAGGTTGTGAGGAGATTCTTTCTCGTTTGGTGGACATCGAGTACTCCTTGTGCTGA 1272 0.4135 MKLLVGLLLSRLDQTPPLSVGYGLFAVVWWIQLECSIQCRAVRAMNETLKQNRLLRERGDDNSTNNNSSDANLQKNVSNFHLDGHDALYSRQHDQGNSQKAMSLPSSPHDYRGHSSERIGPSRQGVNDEMESTWNKVLESPMFNNKPLLPYEKWNIDFSELTVGTRVGIGFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMELGSLYYLIHLSGQKKKLNWRRRLRMLRDICKITCLCRGLMCIHRMKVVHRDLKSANCLVNKHWTVKICDFGLSRLMTESPMRDSSSAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLSRPWEGIPPERVVYSVANEASRLEIPEGPLGRLISDCWAESHERPGCEEILSRLVDIEYSLC 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01165 423 Gene3D Phosphorylase Kinase; domain 1 154 239 - -
Vimu4g01165 423 FunFam Serine/threonine-protein kinase isoform 1 151 239 - -
Vimu4g01165 423 Pfam Protein tyrosine and serine/threonine kinase 162 415 IPR001245 GO:0004672|GO:0006468
Vimu4g01165 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 286 298 IPR008271 GO:0004672|GO:0006468
Vimu4g01165 423 SMART serkin_6 161 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01165 423 SUPERFAMILY Protein kinase-like (PK-like) 134 415 IPR011009 -
Vimu4g01165 423 ProSiteProfiles Protein kinase domain profile. 161 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01165 423 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 83 415 - -
Vimu4g01165 423 ProSitePatterns Protein kinases ATP-binding region signature. 167 188 IPR017441 GO:0005524
Vimu4g01165 423 Gene3D Transferase(Phosphotransferase) domain 1 240 421 - -
Vimu4g01165 423 MobiDBLite consensus disorder prediction 92 127 - -
Vimu4g01165 423 MobiDBLite consensus disorder prediction 55 74 - -
Vimu4g01165 423 CDD STKc_MAP3K-like 167 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01165 Vimu-Chr4 10354249 10365260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01165 40 423 MAP Kinase Kinase Kinase AT3G58640 73.469 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Vimu4g01165 PK_Tyr_Ser-Thr 2.5e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01165 - - vum:124839195 769.229