Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01164 ATGGTTTTATACTTTGATGCTGTGGTTCGTGGTGTAGGTGACTATTTGATTCAAAGAAGCACTTGCCTACATTCTTTGCTCGAGAGAATCATGAGCCATCAAACCTGCTTTGCCAAGGATGGTGTTAACCCGAAGGTTCAAGAGGCCCCAGCCACCGCCAGGCGCATCATGGACTCCATCGCCGGAGCTCCGCCTCACACAGCAAACCACCCGTCGTCTCGGCCGTCGCCGTTTCCCGGCCGGGAAGACTGCTGGTCGGAGGAAGCCACGTTCACGCTCATCGAGGCATGGGGAGAGCGCCACCTCGAACTCAACCGCGGGAACCTCCGCCAAAGGCACTGGCAGGAGGTTGCCGACACCGTCAACGCACGTCACGGCAACGCCGGCGCAAGGGCCCGCCGCACCGACGTGCAGTGCAAGAACCGCATCGACACGCTCAAGAAGAAGTACAAGATCGAGAAGGCTAGGGTTTCCGATTCCGGCGATTCCGCCACCGCCTGGCCATTCTTCCGCCGCCTCGAGTTTCTCATCGGCGACAATTTCCCAGCGAAGAAGCCCTCTCCGCCGGAGTCAGGCTCGGCCGATCGGCGGAGCACTCCTCCGGCGAAGTCTCCGGCGTGGGCCCTCATTCCGGTCGGTCCTCGATCCCGCTCGCAGAAGCGGCCTACGCCGGCGGCGCCAGCGGCAGAGAGCGTTGCCGACTCATACTTCCGGCGGAATTTCTCGGTTTTTGCGGCAGCGGCGGCGGCGGCCGCGGAGGCTGATAGCGATAATTCGAACGGTTCTAAATGGAGCAGTGGGAGTGAGAAGAGAGAGAAGAAGAAAAGAGGAAGGGATTGGGAATTTGGTTACAGAGAGGTTGCAGAAGCGTTGGAGAGGTTTGGTGAGATTTATGAGAGAGTTGAAGAAGCTAAACAGAGGCAAATGGTTGAGTTGGAGAAACAGAGAATGCAGTTTGCTAAGGATTTGGAAACCCAGAGAATGAAACTCTTCATGGAAACTCAGCTTCACTTGCAAAAAATGAATCGCTCCAACTCCAAGCGTTCTTCTGCAACTGGTTAG 1062 0.5687 MVLYFDAVVRGVGDYLIQRSTCLHSLLERIMSHQTCFAKDGVNPKVQEAPATARRIMDSIAGAPPHTANHPSSRPSPFPGREDCWSEEATFTLIEAWGERHLELNRGNLRQRHWQEVADTVNARHGNAGARARRTDVQCKNRIDTLKKKYKIEKARVSDSGDSATAWPFFRRLEFLIGDNFPAKKPSPPESGSADRRSTPPAKSPAWALIPVGPRSRSQKRPTPAAPAAESVADSYFRRNFSVFAAAAAAAAEADSDNSNGSKWSSGSEKREKKKRGRDWEFGYREVAEALERFGEIYERVEEAKQRQMVELEKQRMQFAKDLETQRMKLFMETQLHLQKMNRSNSKRSSATG 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01164 353 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 67 345 IPR044823 -
Vimu4g01164 353 MobiDBLite consensus disorder prediction 252 277 - -
Vimu4g01164 353 MobiDBLite consensus disorder prediction 61 81 - -
Vimu4g01164 353 Coils Coil 287 318 - -
Vimu4g01164 353 FunFam trihelix transcription factor ASIL2 85 152 - -
Vimu4g01164 353 Gene3D - 85 152 - -
Vimu4g01164 353 Pfam Myb/SANT-like DNA-binding domain 82 175 IPR044822 -
Vimu4g01164 353 MobiDBLite consensus disorder prediction 181 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01164 Vimu-Chr4 10346373 10348004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01164 236 352 Trihelix Transcription Factor Family AT3G14180 38.655 9.47e-16 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu4g01164 Myb_DNA-bind_4 3.9e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01164 - - gmx:100784918 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01164 4 10346373 10348004 Vimu4g01164 4 10346373 10348004 ECH