Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01153 ATGCGAAGCTGCATCAACCTCTGGATCGCTGTCGCACTCTTCGTCCCTGTTCTTCTCTCTCTCAGAAGCCGTCGAGGCGAAACCCAAATCCAAACCACTCCTTCTTCATCTTCTGCTGCTTCTTTCTCTGATTCTTCTTCCTTCTCCGTGAAGCTTGCCAACACATTCCAATTCAACCAAAGGATCCGAGACGGCTCCAATCTTGAATATGATTTCTACAAGGACACGTGTCCCCAAGCCGAGGGCATTGTCCGTTCAGCGCTCACTCGCATTTACTTCGACCACAGGGACGTTGCTCCGGCCCTGCTTCGTCTCTTCTTCCACGATTGCTTCATCCAGGGATGTGATGCTTCGTTGCTGTTGGATGAGAACGATGGTAATAGTAACAGTTCGGTGGAGAAGCAGGCTGTGCCAAATCAGACACTGAGAGGTTTTGACAAGATTGACTTGATAAAGGAGGAGGTGGAGCAAGCGTGTCCTGGTGTTGTATCTTGTGCTGATATAGTTTCTCTTGCAGCAAGGGATTCCGTTCTTCTGGCTGGTGGGCCATTCTATCCAGTTTTAACGGGAAGAAGAGACAACCATCAATCGTTTTTCGAAGAAGCAACTGCTCAGATTCCCAGACCTGATGATAATGTTACACGCACATTGCATCTCTTTAATCTCAGAGGATTTAATGCAAGAGAAACTGTCAGCCTTCTTGGAGGACACAACATTGGAAAAATTGGTTGTGATTTCATTCTGCAAAGGTTATACAACTTTCAGGACACAAGACAACCAGATCCTAGTATACCTCCTGATTTCCTTCGTCAGATGAGGCTAAATTGTCCAAACAATTCAAACACCAACAATAAAGATGAGTTTATGACTTCAAAGCCTATGAGCAGTGATGTTCACTCTAAATCAGGGATGTCATACATGCAAGCATTGTCAACTTCAGTGTCATCAGGTTCAACATTTGACACGCACTACTACCAAAGTCTGCTAAGAGGAAGAGGACTACTTTTTGCTGATCAGCAACTGATGGCCGAGGATAAAACTGCTAAATTGGTCTCTGCTTATGCTTCAGATGATGGATCAACTTTTCGCATGGACTTTGCCAGAGTCATGTTGAAAATGTCTAATCTTGATGTTTTGACAGGACTTCAAGGTCAAGTTCGACTCAATTGCTCCAGACCTGTGACTTCATGA 1191 0.4484 MRSCINLWIAVALFVPVLLSLRSRRGETQIQTTPSSSSAASFSDSSSFSVKLANTFQFNQRIRDGSNLEYDFYKDTCPQAEGIVRSALTRIYFDHRDVAPALLRLFFHDCFIQGCDASLLLDENDGNSNSSVEKQAVPNQTLRGFDKIDLIKEEVEQACPGVVSCADIVSLAARDSVLLAGGPFYPVLTGRRDNHQSFFEEATAQIPRPDDNVTRTLHLFNLRGFNARETVSLLGGHNIGKIGCDFILQRLYNFQDTRQPDPSIPPDFLRQMRLNCPNNSNTNNKDEFMTSKPMSSDVHSKSGMSYMQALSTSVSSGSTFDTHYYQSLLRGRGLLFADQQLMAEDKTAKLVSAYASDDGSTFRMDFARVMLKMSNLDVLTGLQGQVRLNCSRPVTS 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01153 396 CDD secretory_peroxidase 67 392 IPR033905 GO:0004601|GO:0042744
Vimu4g01153 396 FunFam Peroxidase 71 216 - -
Vimu4g01153 396 PRINTS Plant peroxidase signature 162 172 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu4g01153 396 PRINTS Plant peroxidase signature 311 326 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu4g01153 396 PRINTS Plant peroxidase signature 327 344 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu4g01153 396 PRINTS Plant peroxidase signature 101 121 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu4g01153 396 PRINTS Plant peroxidase signature 228 240 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu4g01153 396 PRINTS Plant peroxidase signature 77 96 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu4g01153 396 PRINTS Plant peroxidase signature 181 196 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu4g01153 396 PRINTS Plant peroxidase signature 143 156 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu4g01153 396 PRINTS Plant peroxidase signature 368 381 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vimu4g01153 396 Gene3D - 71 391 - -
Vimu4g01153 396 PRINTS Haem peroxidase superfamily signature 163 180 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu4g01153 396 PRINTS Haem peroxidase superfamily signature 99 113 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu4g01153 396 PRINTS Haem peroxidase superfamily signature 313 328 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu4g01153 396 PRINTS Haem peroxidase superfamily signature 181 193 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu4g01153 396 PRINTS Haem peroxidase superfamily signature 229 244 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu4g01153 396 Pfam Peroxidase 84 357 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu4g01153 396 Gene3D Peroxidase, domain 2 207 373 - -
Vimu4g01153 396 SUPERFAMILY Heme-dependent peroxidases 68 392 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu4g01153 396 ProSiteProfiles Plant heme peroxidase family profile. 67 394 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu4g01153 396 ProSitePatterns Peroxidases active site signature. 99 110 IPR019794 GO:0004601
Vimu4g01153 396 PANTHER PEROXIDASE 25-RELATED 50 381 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01153 Vimu-Chr4 10153324 10155553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01153 64 392 Peroxidase AT4G33870 45.294 4.55e-98 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01153 K00430 - gmx:100804973 669.463