Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01139 ATGTTAAAGGCCTTTGTTAAGGCTCAGAAATCAAGGGCTTACTTCAAGAGATATCAAGTGAAGTTCAAGAGAAGAAGAGAGGGAAAAACCGATTACCGAGCCAGGATTCGGTTGATTAACCAGGATAAGAACAAGTATAACACACCAAAATATCGCTTTGTGACTAACAAGGACATCATTGCCCAAATAACGTCTGCTACAATTGCTGGTGATAATGTTCTTGCTGCAGCATATGCGCATGAGCTGCCACGCTACGGTCTTGAAGTAGGCCTTACAAACTATGCCGCAGCTTATTGCACTGGACTCTTGTTGGCCCGTCGAGTGCTTAAGAAGCTTGAAATGGATGAGGAGTATGAAGGAAATGTTGAGGCCACCGGAGAGGATTATTCAGTGGAACCAGCTGAAACTAGGAGACCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACCACAACAGGCAATCGTGTCTTTGGTGCCCTTAAGGGAGCTCTCGATGGGGGTTTGGATATCCCTCATAGTGATAAAAGGTTTGCTGGCTTTGATAAGGATAAGAAGGAGCTTGATGCTGAGGTTCATCGCAAATATGTCTTCGGTGGACATGTTGCTGCTTATATAAAGACATTGATTGAAGATGAGCCAGAGAAATACCAGTCACACTTTAGTGCTTATATCAAGCAGGGAATAGAGCCTGATGGTCTGGAAGATCTGTATAAGAAGGTTCATGCTGCCATCCGAGCTGACCCTACTTTCAAGAAATCCGAGAAAGAGGCACCAAAGGAGCACAAGAGGTACAATCTGAAGAAACTCACTTATGAGGAGAGAAAGGCTAAATTGGTTGCACGCTTGCAGGCTCTCAACTCTGCTGCTGGTGATGATGAAGATGATGATGATGAGTGA 900 0.4456 MLKAFVKAQKSRAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVTNKDIIAQITSATIAGDNVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKKLEMDEEYEGNVEATGEDYSVEPAETRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKDKKELDAEVHRKYVFGGHVAAYIKTLIEDEPEKYQSHFSAYIKQGIEPDGLEDLYKKVHAAIRADPTFKKSEKEAPKEHKRYNLKKLTYEERKAKLVARLQALNSAAGDDEDDDDE 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01139 299 Gene3D - 3 290 - -
Vimu4g01139 299 FunFam 60S ribosomal protein L5 3 290 - -
Vimu4g01139 299 SUPERFAMILY Translational machinery components 13 251 - -
Vimu4g01139 299 Hamap 50S ribosomal protein L18 [rplR]. 16 245 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu4g01139 299 CDD Ribosomal_L18_L5e 43 169 - -
Vimu4g01139 299 PRINTS Ribosomal protein L5 signature 22 41 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu4g01139 299 PRINTS Ribosomal protein L5 signature 205 225 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu4g01139 299 PRINTS Ribosomal protein L5 signature 143 162 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu4g01139 299 PRINTS Ribosomal protein L5 signature 163 182 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu4g01139 299 PRINTS Ribosomal protein L5 signature 83 103 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu4g01139 299 Pfam Ribosomal L18 C-terminal region 234 287 IPR025607 -
Vimu4g01139 299 PANTHER RIBOSOMAL PROTEIN L5-RELATED 4 289 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vimu4g01139 299 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 16 174 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01139 Vimu-Chr4 9944875 9947058 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01139 4 291 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 80.069 2.80e-176 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01139 K02932 - gmx:100805868 513.457