Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01135 ATGGCCAAGGCTAGTTCTTCCAACCCAGCTCGTGTAGCTCATGCCCGCATGACTCCTTCTGTTATTGATCCTAAGGTAGTCAAACGGGATCCTAAGGGGGTTAAATCATGTAAGAGGCGGGGTGCAGGGCAAAACATTGGGTCATCTTCAAAATTGAAACCCACGAGGGTTTCTTTCTTCATCATCTCCACTGCCACGAGGCAGCCATCGCCGCACGTCCCACTTCCGGTCGGCGCCGTCGCCGGCGACGCCGGCAACCATCAGAGGCGCAACCCCTACGACTCCACACCAGCCCGCCAGAAGCCCAGCCACGGCCGCGACCCTACCGCCGGCATCGCCAGCCCCGCCGGCGTCGTTCTCTTCTTCCTTTTGACCCGGGCGTGGGTTCTCTGTTTGGTTCGCGATTCGCAGCTCGTGCAGCAATTAGGTTTCATATATATTCTCTCCTTTCGCATCAATTGGGTTTCTGCTCGGCGTCTACCATCAATGGGGAAGGGAACAGGGAGTTTCGGTAAGAGGAGGAACAAGACCCACACCCTCTGTGTCAGATGCGGCCGTCGCAGCTTCCACCTCCAGAAGAGTCGCTGTGCTGCGTGTGCTTTCCCAGCAGCACGCACTAGAAAATATAACTGGAGCGTCAAAGCCATTAGGAGAAAGACCACTGGAACTGGAAGAATGAGGTACCTGCGTCACGTGCCTCGCAGATTCAAGAGCGGCTTCAGAGAGGGTACCGAAGCTGCACCCAGGAAGAGAGGAGCGGCTACCACTGCCTAA 774 0.5659 MAKASSSNPARVAHARMTPSVIDPKVVKRDPKGVKSCKRRGAGQNIGSSSKLKPTRVSFFIISTATRQPSPHVPLPVGAVAGDAGNHQRRNPYDSTPARQKPSHGRDPTAGIASPAGVVLFFLLTRAWVLCLVRDSQLVQQLGFIYILSFRINWVSARRLPSMGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARTRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTEAAPRKRGAATTA 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01135 257 ProSitePatterns Ribosomal protein L37e signature. 166 185 IPR018267 GO:0003735|GO:0005840|GO:0006412
Vimu4g01135 257 FunFam Ribosomal protein L37 163 250 - -
Vimu4g01135 257 MobiDBLite consensus disorder prediction 72 110 - -
Vimu4g01135 257 MobiDBLite consensus disorder prediction 1 50 - -
Vimu4g01135 257 Pfam Ribosomal protein L37e 165 215 IPR001569 GO:0003735|GO:0005840|GO:0006412
Vimu4g01135 257 SUPERFAMILY Zn-binding ribosomal proteins 163 217 IPR011332 GO:0006412
Vimu4g01135 257 PANTHER 60S RIBOSOMAL PROTEIN L37 163 254 - -
Vimu4g01135 257 Hamap 50S ribosomal protein L37e [rpl37e]. 164 215 IPR001569 GO:0003735|GO:0005840|GO:0006412
Vimu4g01135 257 Gene3D - 163 249 IPR011331 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01135 Vimu-Chr4 9875713 9881310 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01135 163 257 Cytoplasmic Ribosomal Protein Gene Family AT1G52300 84.211 8.87e-55 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01135 K02922 - gmx:100306503 197.208