Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01133 ATGAGTTACTTCGACAACGATCACGACCACAGTCCGTTATTCCAGAACCACAATGACTTCAACCGGAGGATACTAATCACCGCCATAGTTTCCCTATCAGTCGTCCTAGTTTTAGTGTTTGCTCTTCACATCTACGCAAGGTTTTTTCTGCGGCGTCAAACTCGCCGCCGAAGCGCCATATACCAACTCAGTCTCAACGTGGCTCACGCCCAAGCCCAACCGCCAAACACCGGCCTCGACCCCGCCGTCATCACCGCTCTCCCCACCTTCCCCTTCAAACAACAGAACGACGCCGTTGAGTGCGCCGTCTGTTTGAGCGTTCTCGAAGACGGAGAGCATGTCAGACTTCTTCCTAATTGCAAGCATAGCTTCCACGTCGGCTGCATCGACAAGTGGCTCGCCTCACACTCCACGTGTCCCCTTTGTCGATCCAAAGCGGAACCGCTCCGACTTGAACCGGTCCAGCGCGAGGACCCCACCCGGTTGGCTCTTCCCACCGCCCCGGTATCGTTCGAAAACGTGGAAGGAACATCCGACGGTGGTAATGGGTCACCTAAAATCAACGGCTCCAATTCCAGGTTGAGTTCGTTTCGAAGAATTCTCAGCAGAGAGAGATCGTTGAGGAGAATCCAACCTTCTACGCATGATGATGTTGAACAGGACTTAGAGAGACAGTGA 678 0.5354 MSYFDNDHDHSPLFQNHNDFNRRILITAIVSLSVVLVLVFALHIYARFFLRRQTRRRSAIYQLSLNVAHAQAQPPNTGLDPAVITALPTFPFKQQNDAVECAVCLSVLEDGEHVRLLPNCKHSFHVGCIDKWLASHSTCPLCRSKAEPLRLEPVQREDPTRLALPTAPVSFENVEGTSDGGNGSPKINGSNSRLSSFRRILSRERSLRRIQPSTHDDVEQDLERQ 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01133 225 CDD RING-H2_EL5-like 100 143 - -
Vimu4g01133 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 148 IPR013083 -
Vimu4g01133 225 Pfam Ring finger domain 100 143 IPR001841 -
Vimu4g01133 225 SMART ring_2 101 142 IPR001841 -
Vimu4g01133 225 MobiDBLite consensus disorder prediction 157 192 - -
Vimu4g01133 225 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 18 162 - -
Vimu4g01133 225 FunFam E3 ubiquitin-protein ligase ATL6 67 148 - -
Vimu4g01133 225 MobiDBLite consensus disorder prediction 171 192 - -
Vimu4g01133 225 SUPERFAMILY RING/U-box 94 147 - -
Vimu4g01133 225 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Vimu4g01133 225 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01133 Vimu-Chr4 9818708 9819773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01133 1 225 C3H Transcription Factor Family AT2G42360 45.228 1.36e-52 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01133 K19038 - gmx:100780265 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01133 4 9818708 9819773 Vimu4g01133 4 9818708 9819773 ECH