Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01120 ATGCTACAAAAGATGGATGATGGAGAAATTTCAAATGCTTTCCCTCTTCAGAACCCATCAACTGCTGCATCTAACCAACCTCCTGTTTTGAAGAGGAAGAGAAACCTCCCTGGAAATCCAGATCCTGAAGCTGAGGTCATCGCCTTATCACCAAAGACTCTGATGGCCACAAACAGATTCGTGTGTGAAATTTGTCTCAAGGGTTTCCAAAGGGACCAAAACCTTCAACTCCATCGACGAGGGCACAACCTTCCATGGAAGCTGAAGCAGAGATCAAGCAAAGAAGTAAGGAAGAGGGTTTATGTGTGTCCAGAGAAGACTTGTGTCCACCACCACCCTTCAAGGGCTCTGGGGGACTTAACTGGGATTAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCTGTGCAGTCAGATTGGAAAGCTCACTCAAAAACATGTGGTACCAGAGAATACAAATGTGACTGTGGCACTATCTTTTCGCGGAGTAGTAAAAGGAGAAATGAGTCTCAGTGCAGTGAAAACAACTTGAAAGAAGCCACACTTGCAAGCAGGAGGGATAGTTTCATCACTCACAGGGCTTTCTGCGATGCCTTAGCAGAAGAAACAGCTAGGGTGAACGCAGCAACAAACATTAGTAACTACAGCATCATGCAAAACCCCCTCGGTTCTAACATGGCAACCCATTTTTCATCATTTTACAAGACAAATTCGTGCCCGGAGGAGCCAGTCCCAGGTAATCAAACATCTAAGGGGCTATCCCTTTGGATGAGTCAAACATCTCAGGCTCATCAAACAATTGCTAACAACAACTTGCATGAGTTTCATCAACTTGGGTCAGGTACTAGCCCAAGCTCAATTTACTGTGGTGGTGGTGGAAATCCACTTGCTCCTTGCTCAAATCCACCACCCTCTAATTACCAACTAAATTGGGTGTTTGGAAATAAAATCTCCCACAATGAAAGCCAAGAGCTAAGCAGCACTGCTTCACTTCCACTAGTGAACAATATTGTTAAGGATAACCCAAACCTGCAACTCATAAGTGTTCCTTCCTTGTATAGTTCCCAACACCAATCCCATCAAACAACCTCAGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCACAGATTGGGACAACTTCATCGGACCCATCATTATTCCTCGGGAGCATAGGTTTGAAATGCAACAGTCCAGGCCAAGATGGGAACAAATTTTGTGGCATGTACGGTTCAAGTTCAGTACTCACAGGTCATGAGGGAGAGAATAATTATTCCGGTGATTTGTCACAAATGCCCCCTACAAAACGACGGCACGTACAGAATGAAGAGAGTGTATGGGGACAAACTAGGGATTTTCTCGGCGTTGGTGGTGCCAACCATTTGCCACCCTTCATCAACCAACGGATGGACTTAATTTGA 1458 0.452 MLQKMDDGEISNAFPLQNPSTAASNQPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRSSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRSSKRRNESQCSENNLKEATLASRRDSFITHRAFCDALAEETARVNAATNISNYSIMQNPLGSNMATHFSSFYKTNSCPEEPVPGNQTSKGLSLWMSQTSQAHQTIANNNLHEFHQLGSGTSPSSIYCGGGGNPLAPCSNPPPSNYQLNWVFGNKISHNESQELSSTASLPLVNNIVKDNPNLQLISVPSLYSSQHQSHQTTSANMSATALLQKAAQIGTTSSDPSLFLGSIGLKCNSPGQDGNKFCGMYGSSSVLTGHEGENNYSGDLSQMPPTKRRHVQNEESVWGQTRDFLGVGGANHLPPFINQRMDLI 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01120 485 MobiDBLite consensus disorder prediction 13 28 - -
Vimu4g01120 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Vimu4g01120 485 FunFam protein indeterminate-domain 12-like 39 107 - -
Vimu4g01120 485 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 469 IPR031140 -
Vimu4g01120 485 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Vimu4g01120 485 MobiDBLite consensus disorder prediction 1 44 - -
Vimu4g01120 485 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Vimu4g01120 485 Gene3D Classic Zinc Finger 57 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01120 Vimu-Chr4 9654997 9657541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01120 27 469 IDZ Gene Family AT1G03840 49.592 1.24e-134 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu4g01120 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01120 K25870 - gmx:100778666 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01120 4 9654997 9657541 Vimu4g01120 4 9654997 9657541 ECH