Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01116 ATGGCAAAAGATAGTGTGGTGAAACTATCAATGATGTTGAAGGAGCAGAAACATATCCAGCAATGGAATGAGGGTGAAAAGAGGATATATAACAAGGAAATGACTCAGTGTAGTTACCCTGAAAACAACCATACCATCATTGTGGAGAGGCACAAAGATAGCTTCATCAGAACATGTCCTACATGTGGTCATCATATCAAATGCCAGGAGCAGGCTGCTGGAATTCATGACTTACCTGGACTTCCAGCTGGAGTAAAGTTTGATCCTACTGATCAAGAGATTCTTGAGCATTTGGAAGCGAAGGTGCGTTCTGATATTCACAAGCTTCATCCGTTAATTGATGAGTTCATCCCTACTCTTGAAGGGGAGAATGGAATCTGCTGTACCCATCCAGAGAAGTTACCAGGAGTTAGCAAAGATGGGTTGATCCGACATTTCTTTCACAGGCCTTCGAAAGCATACACGACAGGAACAAGGAAAAGGAGAAAGGTGCACACAGATGCTGATGGCAGTGAGACACGGTGGCACAAAACAGGTAAGACTAGGCCAGTATACATCAGTGGGAAGTTAAAAGGGTACAAGAAAATTCTTGTGCTATACACCAATTACAGAAAACAAAGGAAGCCTGAGAAGACAAACTGGGTGATGCATCAGTACCACCTTGGCAATAATGAAGAGGAGAAGGAAGGAGAGTTGGTGGTGTCCAAAGTTTTCTATCAGACACAGCCTAGACAATGTGGTTCACTCATGAAAGACTCATATCCTGCTAAACTAAACGGTGAAAGTGTGCATGAGGTAACTAATCATAAAAGCACTGGGTTTGTTGAATTCTACAATAATTCTTTTGTATCCTTTGATCAAGGGGATCAGCATAGGCCTAGCAGTGCACAACTAGTCACCCATTTCCCTGTTCATGATGGTGCTACTTTCATTCCTTGA 939 0.426 MAKDSVVKLSMMLKEQKHIQQWNEGEKRIYNKEMTQCSYPENNHTIIVERHKDSFIRTCPTCGHHIKCQEQAAGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICCTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHTDADGSETRWHKTGKTRPVYISGKLKGYKKILVLYTNYRKQRKPEKTNWVMHQYHLGNNEEEKEGELVVSKVFYQTQPRQCGSLMKDSYPAKLNGESVHEVTNHKSTGFVEFYNNSFVSFDQGDQHRPSSAQLVTHFPVHDGATFIP 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01116 312 FunFam NAC domain-containing protein 73 90 244 - -
Vimu4g01116 312 MobiDBLite consensus disorder prediction 160 176 - -
Vimu4g01116 312 MobiDBLite consensus disorder prediction 154 176 - -
Vimu4g01116 312 SUPERFAMILY NAC domain 76 240 IPR036093 GO:0003677|GO:0006355
Vimu4g01116 312 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 51 264 IPR044799 GO:0003700
Vimu4g01116 312 Pfam No apical meristem (NAM) protein 82 221 IPR003441 GO:0003677|GO:0006355
Vimu4g01116 312 ProSiteProfiles NAC domain profile. 81 240 IPR003441 GO:0003677|GO:0006355
Vimu4g01116 312 Gene3D NAC domain 90 244 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01116 Vimu-Chr4 9647053 9649246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01116 57 257 NAC Transcription Factor Family AT4G28500 80.198 9.92e-118 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu4g01116 NAM 4.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01116 - - gmx:100791648 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01116 4 9647053 9649246 Vimu4g01116 4 9647053 9649246 ECH