Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01115 ATGCTTCACCGTAGCCACCAACTACTTTTGTTTCTTCTTCTTTTTCTCTCTCTAAACCCCACTCTCTCTCTAAACCAAGACGGTCTCTTCCTGCTTCAGGCCAAGCTACAACTCTACGACCCCACAAACGCCCTCTCCCATTGGAACCACCGTGACGCCACCCCATGCAACTGGACCTCCGTCACATGCGACGCCGCCACCGGCGCCGTCGCCTCCCTTGATTTCAACAACCTCCAGCTCTCTGGCCCCGTCCCCGAAGCCGCACTCTGCCGCCTTCCCTCCCTCGCTAGCCTCTCTATGGCCAACAACAACCTTACTGGCATCCTTCCCGACGCCGCGTTCTCCGCCTGCGCTGCCCTCCGTCAGCTCGACCTCTCCCTGAATGGCATCACCGGCCCCATCCCCTCCGCCCTCGCTCTCCTACCGGCCCTCGAAACCCTCGACCTCTCCTCCAACAACTTCTCCGGCGAGATTCCTGCCAGCTTCGGCCAGTTCCGTCAGCTCCGAAGCCTCTCCCTCGTCAGCAACCTCCTGAACGGAACCATTCCCTCTTTCCTGGGCAACGTTTCCACGCTCGAAACGCTTCATCTCGCTTACAACGTTTACTTCAACGCAGGTCACATTCCTCCTTCTTTGGGGAACCTCACGAATCTCGAGGAGCTCTGGCTAGCAGGGTGCAACCTTGTAGGCCCCATTCCTCCTTCTCTAGGAAACTTGACGAAGCTCACAAACCTCGACTTGTCCATGAACAACCTCGTCGGAAACATACCTGAACAACTCGTGTCGGGTTTGCGCAGCATTGTACAAATCGAACTCTACCAGAACGCACTCTCCGGCGCGTTGCCACGCGCCGCGTTCGCAAACCTTGTTAACTTGGAACGGTTCGATGCCTCCACGAACGAGTTGACTGGGACGATTCCGGACGAGTTGTGCGGGTTGAAGAAACTGGGGTCGCTGAACCTGTTCGCTAATAAACTCGAGGGAACTTTGCCTGAGAGTATAGTGAATTCGGAGAACTTGTACGAGTTGAAGTTGTTCAACAACTCACTCTCTGGGTCGTTGCCCAGTGGGTTGGGTGGAAACTCAAAGTTGCAGCGTTTCGACGTTTCGTTTAATCGATTCTCCGGCGAGGTTCCGGCAACGTTGTGCGGCGGAGGAGTGTTGGAGGAGCTGATTTTGATTTACAATTCGTTTTCCGGGAGGATCCCAGACAGTCTCGGGGAATGCAAGAGTTTGAAAAGGGTTCGGCTTAGGAACAATAACCTTTCTGGGGTTGTGCCAGGGGGGTTATGGGGTTTACCCCATTTGTATTTGTTGGAGCTTGTTGAGAATTCTCTTTCTGGGTCGATTTCTAATGGGATTTCAGGGGCACGGAACCTGTCAATTTTGTTAATTTCAGGAAATAATTTTTCTGGGTCGATTCCTGAGGGGATTGGTGAATTGGTTAATCTTGGAGAGTTTGTTTCTAATAATAATAATCTTACTGGCCGGATTCCGACAAGTGTGGTTGGGTTGAGTCAGTTGGATAGGCTGGTCCTCAGAGACAATAAGCTTTTTGGAGAGATTCCTGCTGATGTTAGTGGTTGGAAGGCGCTCAATGAACTTGATTTAGCGAATAATAGATTGGATGGGAGTATTCCTAAGGAGTTATTGGACTTGCCTGCGCTTAAGTATCTTGATCTTTCTAATAATCGGTTATCTGGTGAAATTCCAATTGAGCTGCAGAATATGAAGCTGAACTTGTTGAATTTGTCGAACAATCAGTTTTCTGGGGAGATTCCTCCTCTTTATGCCAATGAGTATTATAGGAATAGTTTTCTCGGAAATCCGGGGCTGTGTAGTTCTCTCTCTGGTCTGTGTCCAAGCTTGGATGAGAACGAGGGTAAGGGCAGGAAATATGTGTGGATTTTCCGGTTCATATTTGTGCTTGCTGGGATTGTGTTAATTGTTGGGGTGTCTTGGTTCTACTTCAAATTCCGGAATTTCAAGAAGATGAAAAAGGGGTTTCAGATATCAAAGTGGAGGTCGTTTCATAAGCTGGGGTTTAGTGAGTTTGAAGTTGTTAAATCGCTAACCGAGGACAATGTTATAGGGAGTGGAGCATCTGGGAAGGTTTACAAAGTTGCGCTGAGCAATGAATATGGTTATACTCTTCGGGTGAACGAAAAGAGTGACATATATAGTTTTGGTGTGGTGATTTTGGAGTTGGTGACTGGGAAGCCTCCTCTTGATCCAGAGTATGGGGAAAAGGATCTAGTGAAATGGGTTTACTCCACATTGGATCAGAAAGGACAGGATGAGGTGATTGATCCAACTTTGGATGCTGAATATAGGGAAGAAATGAGAAAGGTTCTAAACGTGGGGCTTCTTTGCACGACCTCTCTTCCTATAACTCGTCCTTCAATGCGTAGAGTTGTCAAAATGCTGAAGGAAGTAACTGCACCAGTTCTTCCCAAATCCTTAAGTGGAAAACTTTCTCCTTATTTTCAGGAACTACCCTCTGATAATGATCATCAGGAAAGCTTAGTTTGA 2532 0.4858 MLHRSHQLLLFLLLFLSLNPTLSLNQDGLFLLQAKLQLYDPTNALSHWNHRDATPCNWTSVTCDAATGAVASLDFNNLQLSGPVPEAALCRLPSLASLSMANNNLTGILPDAAFSACAALRQLDLSLNGITGPIPSALALLPALETLDLSSNNFSGEIPASFGQFRQLRSLSLVSNLLNGTIPSFLGNVSTLETLHLAYNVYFNAGHIPPSLGNLTNLEELWLAGCNLVGPIPPSLGNLTKLTNLDLSMNNLVGNIPEQLVSGLRSIVQIELYQNALSGALPRAAFANLVNLERFDASTNELTGTIPDELCGLKKLGSLNLFANKLEGTLPESIVNSENLYELKLFNNSLSGSLPSGLGGNSKLQRFDVSFNRFSGEVPATLCGGGVLEELILIYNSFSGRIPDSLGECKSLKRVRLRNNNLSGVVPGGLWGLPHLYLLELVENSLSGSISNGISGARNLSILLISGNNFSGSIPEGIGELVNLGEFVSNNNNLTGRIPTSVVGLSQLDRLVLRDNKLFGEIPADVSGWKALNELDLANNRLDGSIPKELLDLPALKYLDLSNNRLSGEIPIELQNMKLNLLNLSNNQFSGEIPPLYANEYYRNSFLGNPGLCSSLSGLCPSLDENEGKGRKYVWIFRFIFVLAGIVLIVGVSWFYFKFRNFKKMKKGFQISKWRSFHKLGFSEFEVVKSLTEDNVIGSGASGKVYKVALSNEYGYTLRVNEKSDIYSFGVVILELVTGKPPLDPEYGEKDLVKWVYSTLDQKGQDEVIDPTLDAEYREEMRKVLNVGLLCTTSLPITRPSMRRVVKMLKEVTAPVLPKSLSGKLSPYFQELPSDNDHQESLV 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01115 843 Pfam Leucine Rich Repeat 217 239 IPR001611 GO:0005515
Vimu4g01115 843 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Vimu4g01115 843 PRINTS Leucine-rich repeat signature 553 566 - -
Vimu4g01115 843 PRINTS Leucine-rich repeat signature 532 545 - -
Vimu4g01115 843 SUPERFAMILY RNI-like 287 595 - -
Vimu4g01115 843 ProSiteProfiles Leucine-rich repeat profile. 555 578 IPR001611 GO:0005515
Vimu4g01115 843 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 24 189 - -
Vimu4g01115 843 SUPERFAMILY L domain-like 40 379 - -
Vimu4g01115 843 Gene3D Ribonuclease Inhibitor 185 262 IPR032675 -
Vimu4g01115 843 FunFam Leucine-rich receptor-like protein kinase family protein 208 308 - -
Vimu4g01115 843 Gene3D Ribonuclease Inhibitor 24 184 IPR032675 -
Vimu4g01115 843 Gene3D Transferase(Phosphotransferase) domain 1 683 817 - -
Vimu4g01115 843 Pfam Leucine rich repeat 531 589 IPR001611 GO:0005515
Vimu4g01115 843 Pfam Leucine rich repeat 93 154 IPR001611 GO:0005515
Vimu4g01115 843 Pfam Leucine rich repeat 388 446 IPR001611 GO:0005515
Vimu4g01115 843 FunFam Receptor-like protein kinase HSL1 315 622 - -
Vimu4g01115 843 SUPERFAMILY Protein kinase-like (PK-like) 713 823 IPR011009 -
Vimu4g01115 843 SMART LRR_typ_2 289 313 IPR003591 -
Vimu4g01115 843 SMART LRR_typ_2 264 288 IPR003591 -
Vimu4g01115 843 SMART LRR_typ_2 141 165 IPR003591 -
Vimu4g01115 843 SMART LRR_typ_2 553 576 IPR003591 -
Vimu4g01115 843 SMART LRR_typ_2 505 529 IPR003591 -
Vimu4g01115 843 SMART LRR_typ_2 239 263 IPR003591 -
Vimu4g01115 843 SMART LRR_typ_2 409 432 IPR003591 -
Vimu4g01115 843 SMART LRR_typ_2 92 116 IPR003591 -
Vimu4g01115 843 Gene3D Ribonuclease Inhibitor 263 622 IPR032675 -
Vimu4g01115 843 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 713 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01115 Vimu-Chr4 9635492 9638611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01115 710 835 Receptor kinase-like Gene Family AT1G28440 64.394 1.68e-44 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu4g01115 LRR_8 5.8e-10 CL0022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01115 - - gmx:100778128 1032.32