Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01107 ATGGGTGTTAATTACTACGACATCCTTCAGGTCGATAGGGATGCTAAGGATGAGGACCTGAAGAGAGCGTACAAGAGACTCGCCATGAAATGGCACCCCGACAAAAATCTCACGAATAAGGAAGACGCTGAATCCATGTTTAAAAAAGTATCTGAAGCGTATGAGGTTTTAAGTGATCCCCACAAAAGGGCATTTTTTGATTCTACTCTAAAAGCTCGGGTGGAACCTGCTGCTGATGCTGGTGCATCTGGTGATGGTGGACCCACCCGATACCAGAACCCGCTCCCCAAAGCACCTCCAATGGAGCGCAAGTTGCCTTGTACACTCGAAGAGTTGTACAAGGGAATCACCAAGGAGGTGAAATTAAGTCGATTCATCATACAGGCCACAGGTGCTGGTGTTATGAAAATGGTTTTGATTTTGGTTTGGTACAAGTACAGTTCCGTGAAGGATTGTGGTTCTGGCGAATCCAAAACCCTTGATCTTGTTGCTGAAATTGCAGTGATGAACAGGTTTCTAAATCCTGGGCAACGTACGCTGGTGGAAGAGGTATTATTAGTGCAACTGCAGCCTGGTTGGAAGAAGGGCACCAAGCTGACGTATTTGGAGAAGGGATATGAACTGGAAAATCACAGACCAGCTGATCTTGTTATCTTTATATATGAAGAACTTCACAGCGTTTATACTAGAGATGGAGACGACCTTGTGGTGACCCAGAAGATATCTCTTGTGGAAGCCTTGACAGGGTACACTGTGAAACTGGTCACCCTTGATGGAAGAAACTTAACTGTGCCTATCCGCCAAATTATTCATCCTGAATATGAAAAGGTTGTTGAAAGAGAAGGAATGCCTCTCCCAAAGCATCCAAAAAAGAAGGGAAACTTGAGGATAAAGTTCAAAATCACATTCCCAGACCACCTCACTCCTGACCAGAAGCTCGAAATGAAGAAGCTTTTGAGTGATTGA 966 0.4462 MGVNYYDILQVDRDAKDEDLKRAYKRLAMKWHPDKNLTNKEDAESMFKKVSEAYEVLSDPHKRAFFDSTLKARVEPAADAGASGDGGPTRYQNPLPKAPPMERKLPCTLEELYKGITKEVKLSRFIIQATGAGVMKMVLILVWYKYSSVKDCGSGESKTLDLVAEIAVMNRFLNPGQRTLVEEVLLVQLQPGWKKGTKLTYLEKGYELENHRPADLVIFIYEELHSVYTRDGDDLVVTQKISLVEALTGYTVKLVTLDGRNLTVPIRQIIHPEYEKVVEREGMPLPKHPKKKGNLRIKFKITFPDHLTPDQKLEMKKLLSD 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01107 321 CDD DnaJ_C 99 307 - -
Vimu4g01107 321 CDD DnaJ 4 59 IPR001623 -
Vimu4g01107 321 Gene3D DnaJ domain 1 83 IPR036869 -
Vimu4g01107 321 Gene3D - 225 305 - -
Vimu4g01107 321 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 4 319 - -
Vimu4g01107 321 MobiDBLite consensus disorder prediction 77 100 - -
Vimu4g01107 321 PRINTS DnaJ domain signature 24 39 IPR001623 -
Vimu4g01107 321 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vimu4g01107 321 PRINTS DnaJ domain signature 6 24 IPR001623 -
Vimu4g01107 321 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vimu4g01107 321 SUPERFAMILY HSP40/DnaJ peptide-binding domain 101 225 IPR008971 GO:0006457|GO:0051082
Vimu4g01107 321 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Vimu4g01107 321 SUPERFAMILY Chaperone J-domain 3 76 IPR036869 -
Vimu4g01107 321 FunFam DnaJ subfamily B member 13 225 305 - -
Vimu4g01107 321 Gene3D - 90 223 - -
Vimu4g01107 321 SUPERFAMILY HSP40/DnaJ peptide-binding domain 228 312 IPR008971 GO:0006457|GO:0051082
Vimu4g01107 321 Pfam DnaJ domain 4 67 IPR001623 -
Vimu4g01107 321 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vimu4g01107 321 SMART dnaj_3 3 62 IPR001623 -
Vimu4g01107 321 Pfam DnaJ C terminal domain 102 304 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01107 Vimu-Chr4 9561716 9563365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01107 5 68 C2H2 Transcription Factor Family AT1G74250 35.294 1.47e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01107 K09510 - sspl:121745063 307.375