Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01102 ATGCTGGCGGTGTCACCTTTGAGGAGCACAAGAGATGAAGTGCAAGGCGAGATGGAGAGCTTCTCCATTGAAACTGATGACTTTGCTGACTTATCAGAAGGAAACTTGCTTGAAAGCATCAACTTTGATGACCTCTTCATGGGAATCAACGATGATGAAGATGTCTTGCCAGATCTGGAGATGGACTCTGAAATGCTGGCTGAGTTTTCCCTCAGCGAGGAATCGGAGATAGTCTCATCAGTTTCAGTGGTAAATAACAAATCTGATGACAGGAATGAGAATAATATAGTTACTACCGAGAAACAAGATGAGGTTATAGCAGCCAATTTTTCTTCAGATTCTGGTTCCAATTCCGGGTCTAGTAGAGGGGAAGAGATAGCAAGCAAAAGTGAGGAATCAATTCATTCAGTGGTGGTGAATCCATCCCCTAAGGAAAGTGAGAAAGGAAGAAAATCATCAACGCATTCAAGGAATAATCCGCAAGGGAAGAGAAAGGTGAAGGTGGATTGGACCCCAGAATTACACAGGCGATTCGTGCAAGCAGTGGAGCAGCTAGGAGTGGATAAGGCTGTACCTTCAAGGATTTTGGAGATTATGGGAATTGACTGTCTCACTCGCCATAACATTGCCAGCCACCTTCAAAAATATCGATCCCATAGGAAGCATTTGCTAGCACGTGAAGCTGAAGCAGCAAGGTTGAGTCAAAGGAAACAATTCATGGGTGCAGCAAGTGTAGGTAGAGGAGGAGGAGGCAAGAGAGACGTGAACCCTTGGCTTGCAACTACCATGGGTTTCCCTCCCATGACACCAATGCACCATTTCAGACCTTTCCATGTATGGGGGCATCACACCATGGACCAGTCCTTCATGCACATCTGGCCTAAACATCTCCCATATTCACCGTCCCCGCCGGCATGGCCACCGCGAACAGCTCCCTCTCCGCCGCCTCCGGACCCTCTTTATTGGCACCAACATCAACGGGCTCCAAACGCACCAACCCCAGGAACACCGTGTTTTCCACCTCCTCTGACAAGCACGAATGTTAACTTACAGAGATTTGGGTCTCAAACTGTTCCGGGCATCCCACCACACCATACGATGTTCCAAATAGTAGATCCAGGCATTGGCATCCCAGCCACCCAACCACCACCTCGACCCCTCCTCGATTTTCATCCGTCAAAGGAGAGCATAGATGCAGCTATTAGTGATGTTTTATCAAAACCATGGTTGCCACTACCACTTGGTCTTAAAGGTCCAGCAGTTGATGGTGTAATGAGTGAACTACAAAGACAAGGGATTCCCAAAATCCCTCCTTCTTGTGCTTGA 1326 0.4759 MLAVSPLRSTRDEVQGEMESFSIETDDFADLSEGNLLESINFDDLFMGINDDEDVLPDLEMDSEMLAEFSLSEESEIVSSVSVVNNKSDDRNENNIVTTEKQDEVIAANFSSDSGSNSGSSRGEEIASKSEESIHSVVVNPSPKESEKGRKSSTHSRNNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAARLSQRKQFMGAASVGRGGGGKRDVNPWLATTMGFPPMTPMHHFRPFHVWGHHTMDQSFMHIWPKHLPYSPSPPAWPPRTAPSPPPPDPLYWHQHQRAPNAPTPGTPCFPPPLTSTNVNLQRFGSQTVPGIPPHHTMFQIVDPGIGIPATQPPPRPLLDFHPSKESIDAAISDVLSKPWLPLPLGLKGPAVDGVMSELQRQGIPKIPPSCA 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01102 441 FunFam Two-component response regulator 161 224 - -
Vimu4g01102 441 MobiDBLite consensus disorder prediction 99 124 - -
Vimu4g01102 441 MobiDBLite consensus disorder prediction 82 168 - -
Vimu4g01102 441 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 440 IPR044825 GO:0003700|GO:0045893
Vimu4g01102 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 221 IPR017930 -
Vimu4g01102 441 SUPERFAMILY Homeodomain-like 163 222 IPR009057 -
Vimu4g01102 441 NCBIfam myb-like DNA-binding domain, SHAQKYF class 165 219 IPR006447 GO:0003677
Vimu4g01102 441 Gene3D - 162 223 - -
Vimu4g01102 441 Pfam Myb-like DNA-binding domain 168 217 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01102 Vimu-Chr4 9498245 9501652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01102 1 331 G2-like Transcription Factor Family AT5G44190 40.669 3.72e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu4g01102 Myb_DNA-binding 5.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01102 - - gmx:100790591 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01102 4 9498245 9501652 Vimu4g01102 4 9498245 9501652 ECH
Vimu5g01364 5 24332068 24337526 Vimu4g01102 4 9498245 9501652 PCT