Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01086 ATGAATCAGTACTTTTTGCTCATAGCTTGCCTACAGTTATGGCCTCTCATTACTCCAGTAAATCCTGCCAGTACGTGGGGTCCACTTATCTTTATTTTTGCTGTCTCTGCATCAAAAGAGGCGTGGGATGATTACAATAGATATCTTTCAGACAAAAAGGCAAATGAGAAGGAAGTCTGGGTTGTGAAGAAGGGCATCAAGAAACATGAAGGAAGATTTACAGAAGCTTTAACATTTGATATTATATTGTGTGTTCTTATGTCTGTAGATCTAATGATTTTTTCTTGGGTGGGCGTGGTTCCCTTGGTGGTTTTGCAGATTGAAGCCCAGGATATTCATGTAGGTAATATAGTATGGCTACGTGAAAATGATGAAGTGCCTTGTGACCTTGTTTTAATTGGTACCTCTGATCCTCAAGGAGTTTGCTATGTAGAGACAGCTGCATTGGATGGTGAAACGGATTTAAAGACACGGGTCATACCTTCTGCTTGCGCGGGAATTGATGTTGAACTATTGCACAAAATTAAGGGTGTAATTGAGTGTCCTTGTCCAGATAAAGATATCAGGAGATTTGATGCAAATATGCGGTTGTTTCCCCCATTTATTGATAATGATATATGCCCTTTAACCATTAAAAACACCATTCTTCAGTCATGTAATGAAACCAAAATGGGCATGAGTAGAGGTATACCAGAACCAAAGCTCACTGCTATGGATGCCATGATTGACAAGTTGACTGGCGCTATTTTTATATTCCAAATAGTTGTTGTTCTTGTTCTTGGGATAGCAGGGAATGTTTGGAAGGAGACGGAAGCGAAGAAGCATGCACCCTTTGCAATTTTGATTTTGTTTCAACATAGAGTATATCGGCTTGGCTGGTTGCTTCCTTTGCGCTTTCATCAATGGTATGTTCTTTACCCTCATGAAGGTCCGTGGTATGAACTGTTGGTCATCCCTTTGCGGTTTGAACTTCTCTGTTCCATCATGATACCCATTTCAATTAAGGTATCTCTGGATTTGGTGAAGAGCTTGTATGCAAAATTTATTGACTGGGACAATCAGATGATTGACCATGAGACTAGAATTCCATCCCATGCAACAAATACAGCGATAAGTGAGGACCTGGGACAAGTTGAGTACATTTTGACTGACAAAACAGGAACGCTGACTGAGAATAAGATGATATTTAGAAGATGTTGTATTGGTGGCAATTTCTATGGAAATGAAAGTGGAGATGCATTGAAGGATGTAGAGCTTATCAATGCTGTGTCCAGTGGTTCTTCAGATGTTGTACGATTTCTTACAATTATGGCAATATGTAATACTGTCATACCTACGCGAAGCAAAACTGGAGATATCTTGTATAAAGCACAGTCTCAAGATGAGGATGCTCTTGTTCAGGCTGCTGCTCAATTGCATATGATTTACTTTAATAAGAGTGGAAATATTCTTGAAGTCAATTTCAACTCTTCAATACTTCAGTATGAAGTCCTGGAAATCCTAGAGTTCACCTCTGATAGGAAAAGAATGTCAGTAGTATTGAAGGATTGCCAAAATGGAAAGATCCTTCTATTGTCGAAAGGAGCAGATGAGGCTATTCTTCCATTTGCTCGTGCTGGGATATTCTTTCAATTCATGATTCTTTATACTTCTCCTTTCTTCTCACGAATATGGCCAGCTGTTGGTTTAGAGTCAGAGAGCATTATAATGATTTCAGATGAGCAGGGAGTGAAATGTTGA 1740 0.3931 MNQYFLLIACLQLWPLITPVNPASTWGPLIFIFAVSASKEAWDDYNRYLSDKKANEKEVWVVKKGIKKHEGRFTEALTFDIILCVLMSVDLMIFSWVGVVPLVVLQIEAQDIHVGNIVWLRENDEVPCDLVLIGTSDPQGVCYVETAALDGETDLKTRVIPSACAGIDVELLHKIKGVIECPCPDKDIRRFDANMRLFPPFIDNDICPLTIKNTILQSCNETKMGMSRGIPEPKLTAMDAMIDKLTGAIFIFQIVVVLVLGIAGNVWKETEAKKHAPFAILILFQHRVYRLGWLLPLRFHQWYVLYPHEGPWYELLVIPLRFELLCSIMIPISIKVSLDLVKSLYAKFIDWDNQMIDHETRIPSHATNTAISEDLGQVEYILTDKTGTLTENKMIFRRCCIGGNFYGNESGDALKDVELINAVSSGSSDVVRFLTIMAICNTVIPTRSKTGDILYKAQSQDEDALVQAAAQLHMIYFNKSGNILEVNFNSSILQYEVLEILEFTSDRKRMSVVLKDCQNGKILLLSKGADEAILPFARAGIFFQFMILYTSPFFSRIWPAVGLESESIIMISDEQGVKC 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01086 579 Gene3D - 378 540 IPR023299 GO:0000166
Vimu4g01086 579 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 536 - -
Vimu4g01086 579 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 389 537 IPR023299 GO:0000166
Vimu4g01086 579 ProSitePatterns E1-E2 ATPases phosphorylation site. 384 390 IPR018303 -
Vimu4g01086 579 FunFam Phospholipid-transporting ATPase 99 231 - -
Vimu4g01086 579 Pfam Cation transport ATPase (P-type) 439 534 - -
Vimu4g01086 579 SUPERFAMILY Calcium ATPase, transduction domain A 105 164 IPR008250 -
Vimu4g01086 579 Gene3D - 37 220 - -
Vimu4g01086 579 SUPERFAMILY Calcium ATPase, transmembrane domain M 1 358 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01086 Vimu-Chr4 9360017 9365864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01086 1 540 Primary Pumps ATPases AT5G44240 73.561 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01086 K01530 - gmx:100778546 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01086 4 9360017 9365864 Vimu4g01086 4 9360017 9365864 ECH