LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu4g01084	TTGATTATTGCAGGGCAGCAGACTCGACATTTCATTGAAGCTGTGGAGCAGTATGCTCACTTGGGATTGCGTACATTATGTTTGGGTTGGCGTGAGTTAAAAAAAGATGAATATAGAGAATGGTCTTTGATGTTTAAAGAGGCCAGCAGCACTTTGGTTGATAGGGAGTGGAGAGTAGCTGAGGTCTGTCAACGAGTAGAACATGACTTGGAAATTCTTGGTGTAACAGCAATAGAGGATCGTTTACAGGATGGAGTTCCTGAAACGATAGAAACTCTAAGAAAAGCTGGAATAAATTTTTGGATGCTAACTGGAGATAAGCAGAATACAGCAATACAAATCGCTCTGTCATGTAATTTTATTTCCCCAGAACCAAAGGGACAGCTTCTATCAATTGATGGAAAAACAGAGGAAGAGGTTTGTAGGAGTTTAGAAAGAGTGTTACGAACTATGCGGATAACTACCTCAGAACCCAAGGATGTGGCTTTTGTTGTTGATGGTTGGGCACTTGAGATTGCACTTACTCACTACCGTAAAGCTTTCACTGAGCTGGCAGTTTTGTCGAGGACTGCTATATGTTGTCGTGTTACACCATCACAAAAAGCACAGCTTGTTCAGATCTTAAAATCATGTGATTATAGAACATTGGCTATTGGTGATGGTGGAAATGATGTAAGGATGATACAACAAGCTGATATTGGTGTGGGTATCAGTGGAAGAGAAGGATTGCAGGCAGCAAGAGCAGCTGATTACAGTATTGGAAGTGTCTCTGGAACTAGCCTCTTCAATTCTGTTAGCTTGATGGCTTACAATGTTTTCTACACCAGTGTTCCTGTTCTAGTCAGCGTGCTTGACAAAGATCTTAGTGAGGAAACTGTAATGCAGCATCCGCAAATTTTATTTTACTGCCAAGCGGGAAGGCTTCTGAATCCTAGTACATTTGCTGGATGGTTTGGACGATCTCTCTTCCATGCAATAGTTGTATTTGTGATAAGCATACATGCCTATGCTTATGATAAAAGTGAAATGGAGGAGGTTTCAATGGTTGCTCTTTCGGGTTGTATATGGTTACAGGCTTTTGTAGTGACAATGGAGACCAATTCCTTTACTATATTGCAACATATGGCTATATGGGGTAATTTGGCTGCCTTTTATGTCATTAACTGGATCTTCAGCGCTCTTCCTTCATCAGGGATGTATACAATTATGTTTAAGTTGTGTCATCAGCCGTCATATTGGATAACAGTATCTCTCATGGTTGCGGCAGGGATGGGTCCCATTCTAGCTATCAAATACTTCCGATATACATATAGACCGAGCAAAATCAATACATTGCAGCAAGCTGAACGTGTGGGCGGGCCAATTTTGTCTCTTGGCCCCATTGAGCCTCAGCCGAGATCTATAGAGAAAGATGTTTCTACCCTGTCAATAACACAACCCAAAAACAGAAATCCTGTGTATGAACCACTGTTGTCAGATTCCCCGAATGCTACCAGAAGATCTTTCGGATCAGGAACACCATTTGATTTTTTCCAGTCACAATCAAGATCATCTCTGTCTAACTACACAAGAAAGGACAACTGA	1584	0.4135	MIIAGQQTRHFIEAVEQYAHLGLRTLCLGWRELKKDEYREWSLMFKEASSTLVDREWRVAEVCQRVEHDLEILGVTAIEDRLQDGVPETIETLRKAGINFWMLTGDKQNTAIQIALSCNFISPEPKGQLLSIDGKTEEEVCRSLERVLRTMRITTSEPKDVAFVVDGWALEIALTHYRKAFTELAVLSRTAICCRVTPSQKAQLVQILKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGSVSGTSLFNSVSLMAYNVFYTSVPVLVSVLDKDLSEETVMQHPQILFYCQAGRLLNPSTFAGWFGRSLFHAIVVFVISIHAYAYDKSEMEEVSMVALSGCIWLQAFVVTMETNSFTILQHMAIWGNLAAFYVINWIFSALPSSGMYTIMFKLCHQPSYWITVSLMVAAGMGPILAIKYFRYTYRPSKINTLQQAERVGGPILSLGPIEPQPRSIEKDVSTLSITQPKNRNPVYEPLLSDSPNATRRSFGSGTPFDFFQSQSRSSLSNYTRKDN	527

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu4g01084	527	MobiDBLite	consensus disorder prediction	479	527	-	-
	Vimu4g01084	527	Pfam	haloacid dehalogenase-like hydrolase	63	168	-	-
	Vimu4g01084	527	NCBIfam	HAD-IC family P-type ATPase	67	130	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Vimu4g01084	527	NCBIfam	HAD-IC family P-type ATPase	185	249	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Vimu4g01084	527	MobiDBLite	consensus disorder prediction	479	521	-	-
	Vimu4g01084	527	FunFam	Phospholipid-transporting ATPase	70	257	-	-
	Vimu4g01084	527	Gene3D	-	70	255	IPR023214	-
	Vimu4g01084	527	PANTHER	PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE	12	255	-	-
	Vimu4g01084	527	PRINTS	P-type cation-transporting ATPase superfamily signature	218	237	-	-
	Vimu4g01084	527	PRINTS	P-type cation-transporting ATPase superfamily signature	96	106	-	-
	Vimu4g01084	527	SUPERFAMILY	Calcium ATPase, transmembrane domain M	257	439	IPR023298	-
	Vimu4g01084	527	Pfam	Phospholipid-translocating P-type ATPase C-terminal	255	440	IPR032630	-
	Vimu4g01084	527	SUPERFAMILY	HAD-like	66	262	IPR036412	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu4g01084	Vimu-Chr4	9340815	9350058	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu4g01084	4	527	Primary Pumps ATPases	AT5G44240	78.147	0.0	909

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu4g01084	K01530		-	gmx:100786505	987.252