Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01083 ATGAGCAGTGTCTCTTCCGACCACCACAAGTTTCACCCCTCTCATCAATTCCTCTCTCCCAACAAAACCCTCAGAGAGATTGACGTCCCTCCAAGGAAGCTCCTCACTCGCCGTGCCGCCGCTGCATGTGCTGGCTCGGAGTTGTTTTCTGACGACACCATGCTGCAAAAGTTCCTTCCTTCCAACAACCTTGATGACTCCGATGAGGACGACCCTTACTCCGCCGACCACTTCAGGATGTTTGAGTTCAAGGTCCGCCGGTGCACTCGCAGCAGGAGTCATGACTGGACTGACTGCCCTTTTGCTCACCCTGGAGAAAAGGCTCGCCGCCGTGACCCTCGGCGGTATCACTACTCGGGAACTGTGTGTCCTGAATATCGTCGTGGAGGGTGCAACCGTGGTGATGCATGTGAATTCGCTCATGGAGTATTTGAATGCTGGCTGCACCCTGCAAGATACAGGACAGAGGCCTGTAAGGATGGAAAGAACTGCAAGAGAAAGGTTTGTTTCTTTGCACACACACCTCGCCAGCTGAGAATTTTACCGGTAACTTCTCCTTCTTCCAATGACATGTCATGCAAGAAGAACATTAACAATCTCTTGAACCATGCTTCAAGATCCAACAACAACAACAACGGCTGTTGTTTGTTTTGCCATTGTGTTTCTTCCTCTTCCTCTTCCTCTTCCACCGCTTCTCCAACTTCAACCCTCTTCAACATGTCTCATTACTCGCCACCGCTATCTCCATCCTCCTCCTCCTCCTCACCGCCTCCTTCTCCCTTGAAACCCCGAAAAGGGGTTTCTGTTTCTCCAATTTCCCTATATGGTGCTGCTCATCATGGGGTGGTGAGTTACAAAGAAGCCTTCGCTGAATTTGTGAACTCCTTGGAGGGGTTGAGTTTGAACGAGGGTTCCCCCGTTTCTGGTGCCAAACCATTGAGCTTGCCTTGGATTGATGTTTCTCTGAACTGTGAGGAACAGCTGCAGCAACAACGACAACCGCTCATTGCTTCTTCTTTTGGCTGCGAAGATCAGCAGCAGTTTATTTTTTCACCATCCTCCACTCAGACACCCACAAATGTTGCGTTTTGCAGCAACAGGTTTACGGGCAACAACAACAACAACAACGTTGTCGGTGCTGACTCAAATGTCCCAGATCTTGCTTGGGTAAACGAGTTGCTGATGTAG 1188 0.5008 MSSVSSDHHKFHPSHQFLSPNKTLREIDVPPRKLLTRRAAAACAGSELFSDDTMLQKFLPSNNLDDSDEDDPYSADHFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGGCNRGDACEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSPSSNDMSCKKNINNLLNHASRSNNNNNGCCLFCHCVSSSSSSSSTASPTSTLFNMSHYSPPLSPSSSSSSPPPSPLKPRKGVSVSPISLYGAAHHGVVSYKEAFAEFVNSLEGLSLNEGSPVSGAKPLSLPWIDVSLNCEEQLQQQRQPLIASSFGCEDQQQFIFSPSSTQTPTNVAFCSNRFTGNNNNNNVVGADSNVPDLAWVNELLM 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01083 395 PANTHER UNKEMPT FAMILY MEMBER 49 394 IPR045234 -
Vimu4g01083 395 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 142 IPR000571 GO:0046872
Vimu4g01083 395 MobiDBLite consensus disorder prediction 250 264 - -
Vimu4g01083 395 FunFam Zinc finger CCCH domain-containing protein 66 75 143 - -
Vimu4g01083 395 ProSiteProfiles Zinc finger C3H1-type profile. 118 144 IPR000571 GO:0046872
Vimu4g01083 395 MobiDBLite consensus disorder prediction 246 266 - -
Vimu4g01083 395 SMART c3hfinal6 152 175 IPR000571 GO:0046872
Vimu4g01083 395 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Vimu4g01083 395 Gene3D - 117 181 - -
Vimu4g01083 395 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01083 Vimu-Chr4 9331288 9332892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01083 63 179 C2H2 Transcription Factor Family AT5G07500 64.957 9.45e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu4g01083 zf-CCCH 2.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01083 K23047 - gmx:100801371 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01083 4 9331288 9332892 Vimu4g01083 4 9331288 9332892 ECH