Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01081 ATGGAGGGGTTGGAGCCAAAGGTGGTGGTGAGGGGTGAGAGGTTGAAGAGGGATGTGGTAGATTGTGATGATAACCAAAAAGGGTACGTGGAGCTTCGGCAGGAAAATAAGAAGAAGAAAGGGTGTGTTGATGGTGGCATGCTGTGTTGTCAAGCGGAGAAGTGCAACGCGGATCTGCATGAGGCCAAGCAATACCACAGGAGGCACAAGGTGTGTGAGAGTCATGCCAAGGCTCAGGTTGTGCTTGTTCATGGCACCAAGCAACGGTTCTGTCAGCAATGTAGCAGGTTTGGGGAGGTTCGACTTTTGTGTTTTTAA 318 0.5031 MEGLEPKVVVRGERLKRDVVDCDDNQKGYVELRQENKKKKGCVDGGMLCCQAEKCNADLHEAKQYHRRHKVCESHAKAQVVLVHGTKQRFCQQCSRFGEVRLLCF 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01081 105 Pfam SBP domain 50 100 IPR004333 GO:0003677
Vimu4g01081 105 Gene3D - 46 102 IPR036893 GO:0003677|GO:0005634
Vimu4g01081 105 ProSiteProfiles Zinc finger SBP-type profile. 47 105 IPR004333 GO:0003677
Vimu4g01081 105 SUPERFAMILY SBT domain 48 100 IPR036893 GO:0003677|GO:0005634
Vimu4g01081 105 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 46 97 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01081 Vimu-Chr4 9290803 9291120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01081 50 105 SBP-box Gene Family AT1G02065 64.286 1.39e-20 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu4g01081 SBP 4.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01081 - - vum:124838879 193.741