Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01080 ATGGCGGATGGATTGCATTCACGGCATCCATCTGTAGTTCAAAAGTTATCTGGACAGTCTTACTTTATGTCCAGGCTTGCTCCTAATCACTCCAGAAACTATTCTACCAGTGGTAGTTACTTCAATGGAGGCGTGCAGTCTCTGGGTTTGGTTCCAGTCACAGCACATGCGCCAGCTGAGAAAGGGCTGTCTGGATTTTTGGTGGATTTCCTCATGGGAGGAGTGTCAGCTGCTGTGTCCAAGACGGCTGCAGCTCCGATTGAGCGAGTCAAGTTACTCATCCAAAACCAGGATGAAATGATCAAGAGTGGTCGGTTGTCTGAACCTTACAAGGGAATTGGTGATTGTTTCTCTCGAACCATGAAGGATGAAGGGGTGATTGCTCTTTGGAGAGGAAACACGGCTAATGTTATCAGATACTTCCCTACTCAGGCTCTGAACTTTGCTTTCAAGGATTATTTCAAGAGGCTTTTCAACTTCAAAAAAGACAAGGATGGCTACTGGAAGTGGTTTGCTGGGAATCTAGCGTCTGGTGGGGCTGCTGGGGCCTCCTCCCTCTTGTTTGTCTATTCGCTGGATTTTGCTCGAACTCGTCTAGCAAATGATGCAAAGGCTGCAAAGAAGGGTGGTGAGAGGCAGTTCAATGGCTTGGTTGATGTTTACAGGAAAACCATCAAGTCTGATGGTATTGCTGGCCTTTACCGTGGTTTCAACATCTCGTGTGTTGGAATCATAGTGTACCGTGGTCTTTACTTTGGAATGTATGATTCTTTGAAACCAGTTGTCTTGGTCGGTGGACTGCAGGATAGCTTCTTTGCAAGTTTTCTTCTGGGATGGGGAATCACTATAGGTGCTGGCTTGGCCTCTTACCCCATTGATACGGTGCGTAGAAGGATGATGATGACATCTGGAGAAGCTGTAAAATACAAGAGTTCTTTGGAAGCATTCAAGATAATTATCGCAAAAGAGGGTACGAAGTCACTCTTTAAAGGTGCCGGTGCAAACATATTACGTGCTGTTGCAGGTGCCGGAGTGCTGGCTGGTTATGATAAGCTTCAGCTCATCGTGTTCGGAAAGAAATATGGTTCTGGTGGTGGAGGTTAA 1104 0.4629 MADGLHSRHPSVVQKLSGQSYFMSRLAPNHSRNYSTSGSYFNGGVQSLGLVPVTAHAPAEKGLSGFLVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFSRTMKDEGVIALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDKDGYWKWFAGNLASGGAAGASSLLFVYSLDFARTRLANDAKAAKKGGERQFNGLVDVYRKTIKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLVGGLQDSFFASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYKSSLEAFKIIIAKEGTKSLFKGAGANILRAVAGAGVLAGYDKLQLIVFGKKYGSGGGG 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01080 367 ProSiteProfiles Solute carrier (Solcar) repeat profile. 269 355 IPR018108 -
Vimu4g01080 367 PRINTS Mitochondrial carrier protein signature 69 82 IPR002067 GO:0055085
Vimu4g01080 367 PRINTS Mitochondrial carrier protein signature 234 252 IPR002067 GO:0055085
Vimu4g01080 367 PRINTS Mitochondrial carrier protein signature 132 152 IPR002067 GO:0055085
Vimu4g01080 367 PRINTS Mitochondrial carrier protein signature 184 202 IPR002067 GO:0055085
Vimu4g01080 367 PRINTS Mitochondrial carrier protein signature 278 300 IPR002067 GO:0055085
Vimu4g01080 367 PRINTS Mitochondrial carrier protein signature 82 96 IPR002067 GO:0055085
Vimu4g01080 367 PRINTS Adenine nucleotide translocator signature 66 78 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu4g01080 367 PRINTS Adenine nucleotide translocator signature 110 131 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu4g01080 367 PRINTS Adenine nucleotide translocator signature 143 155 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu4g01080 367 PRINTS Adenine nucleotide translocator signature 274 290 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu4g01080 367 PRINTS Adenine nucleotide translocator signature 169 182 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu4g01080 367 SUPERFAMILY Mitochondrial carrier 65 351 IPR023395 -
Vimu4g01080 367 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 59 365 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu4g01080 367 FunFam ADP,ATP carrier protein, mitochondrial 67 362 - -
Vimu4g01080 367 Gene3D Mitochondrial carrier domain 67 362 IPR023395 -
Vimu4g01080 367 ProSiteProfiles Solute carrier (Solcar) repeat profile. 169 261 IPR018108 -
Vimu4g01080 367 ProSiteProfiles Solute carrier (Solcar) repeat profile. 64 157 IPR018108 -
Vimu4g01080 367 Pfam Mitochondrial carrier protein 270 354 IPR018108 -
Vimu4g01080 367 Pfam Mitochondrial carrier protein 168 261 IPR018108 -
Vimu4g01080 367 Pfam Mitochondrial carrier protein 65 161 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01080 Vimu-Chr4 9273074 9274928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01080 7 357 Antiporters AT4G28390 82.289 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01080 K05863 - gmx:100780671 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01080 4 9273074 9274928 Vimu4g01080 4 9273074 9274928 ECH