Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01079 GAATTTTGGGGATTTGACATGGTTGCCACTCAAAGATTGGAGTTTTCTTTGTGCAAGAAGAGGGGGCTTGAATTTTTGTTTCAGATTGCAGTTGGGTGGTGGGTGGTTCTACTGTTAGTTAATCCTGTGGCGGGTCTCAGACCCTTGAGGGAGAGAACTAGGTCCTGGGATGATGAGCAGCTGTTTACAAGAAAGGACGAGAGCAACTTAGGTCCGTTTTCACAATGGAACATAACAGGAACTTACAAAGGGACTTGGAAATTTTTGGATACCACAAATGGCTCTTCCAGATTTCAAGACATCAGAAAAACAAATGGCAATTCTGTAATTGAGTTAGTCAGTACTCCGACAAAGATAAGCGGAGTGCATTACGTTCAGGGGGTGGTTATATTCCATGATGTGTTTGACAATGAATACGATGTCAGTGGTGCCCAAGTCAGAATAGAAGGTGTATACATATGGCCTTTTAGACAGCTTCGAATGGTTGCCAACAGTGGAAAAGAAGGGGAGTTGAATCAGAATGAAGATTATATTTTATCTAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAGGTACTGCAAGATTCTTCGAGAGATAAAATGTGGAGAAGAAAACATTCTCTGATTCATGATGCGGAGAAACATTGTAATATCGAAATTGCTGCTCAGGTTTCACGCTTGCCATCATCAAATAACGAAGGTGAACGTGATCATTTTCATCTAGAAGGGTTAATGGAGAGCCCCTCCGCCGATGATGATGGGGACTGCTTCTCACCATTACTGCTAAACGCAACATCTGTCAAAATTGAGGTCTACTATAACAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTTTCTTTCTTGCAAGTCCTTCTATTAATTCGTCAAATGGAGCATAGCAGCACTCAATCTGGTGCTGCTAAGGTTTCCATACTAATGATTGGTCAGCAAGCAATTATGGATGCCTATCTTTGCCTTTTACATCTCACTGCAGGAATACTAGTTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTAGTCTTCTCAATATTTGAGATGAGATATCTCCTTGCAATCTGGAAGGCAGGTAGGCCTTTGAGTAATGGTGAAGGTTGGGAAACAATGAGGCGAGAACTTTCAGTTTTATACAGTCGTTTCTTCTATGTAACCGATCTCACCTACTTTGTTCTTGTTGTTGTATATTCCACTGTAGAAGAATGCCTAAGAGATCTAGCTATTTGTTTCTTGTTGTTTCAACTAATGGAGATAATTTCTTATGAAAAAGAGGGCCTCAAATCTAACAGTTTAATTTCTTGTGCAGATGGGATCTTGTTGGGAGGCATTCTACTCATGTATGAGTTCCATAATTATTTGAGACCTATTCTTCTTCTTATGTACTCTTTCTGGATACCTCAGATAATCACCAATGTTATTCGCGATTCGCGTAAACCCTTGCATCCTCATTATATCTTAGGGATAACTGTCACAAGGCTGGCAATCCCATTATATATCTTTGGTTGCCCTAACAACTTCATGCGCATAGAACCAGACAAGAGCTGGTGTGTTTGTTTGGCTGTATTTATTGGACTTCAAGCAGCAATTCTCCTACTTCAGCACTATCTTGGGTCACGTTGGTTCATTCCTCGTCAGATTCTCCCTGAGAAATACAGCTATTATAGGAGGTTTGATCAGGAAACAAGACAGGCTACAGACTGTGTGATTTGCATGACAGCCATTGATATTTCCCAGCGATCTAATGATTGCATGGTGACACCTTGTGATCATTTCTTCCACTTTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGTCCAACTTGCCGGCGCCCATTACCCCCTGCCTAG 1890 0.4085 EFWGFDMVATQRLEFSLCKKRGLEFLFQIAVGWWVVLLLVNPVAGLRPLRERTRSWDDEQLFTRKDESNLGPFSQWNITGTYKGTWKFLDTTNGSSRFQDIRKTNGNSVIELVSTPTKISGVHYVQGVVIFHDVFDNEYDVSGAQVRIEGVYIWPFRQLRMVANSGKEGELNQNEDYILSNPYHLLGVFSSQVLQDSSRDKMWRRKHSLIHDAEKHCNIEIAAQVSRLPSSNNEGERDHFHLEGLMESPSADDDGDCFSPLLLNATSVKIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKAGRPLSNGEGWETMRRELSVLYSRFFYVTDLTYFVLVVVYSTVEECLRDLAICFLLFQLMEIISYEKEGLKSNSLISCADGILLGGILLMYEFHNYLRPILLLMYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFMRIEPDKSWCVCLAVFIGLQAAILLLQHYLGSRWFIPRQILPEKYSYYRRFDQETRQATDCVICMTAIDISQRSNDCMVTPCDHFFHFGCLQRWMDIKMECPTCRRPLPPA 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01079 629 CDD RING-H2_TUL1-like 573 628 - -
Vimu4g01079 629 SMART ring_2 579 622 IPR001841 -
Vimu4g01079 629 FunFam E3 ubiquitin-protein ligase, putative 565 629 - -
Vimu4g01079 629 SUPERFAMILY RING/U-box 561 628 - -
Vimu4g01079 629 SMART ringv_2 578 623 IPR011016 GO:0008270
Vimu4g01079 629 ProSiteProfiles Zinc finger RING-type profile. 579 623 IPR001841 -
Vimu4g01079 629 Pfam Ring finger domain 578 623 IPR001841 -
Vimu4g01079 629 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 565 629 IPR013083 -
Vimu4g01079 629 PANTHER RING ZINC FINGER PROTEIN 132 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01079 Vimu-Chr4 9261543 9271009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01079 557 626 C3H Transcription Factor Family AT4G23450 31.169 3.01e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01079 K23788 - gmx:100780140 1047.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01079 4 9261543 9271009 Vimu4g01079 4 9261543 9271009 ECH