Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01076 ATGTTGATGGTAAGCAATCTAAGAAATTCAAGAGCAAATGATGAACAACAGCCATCGAGAAACCAACCTTCTTCAGAAAAAGTAGAAAGAAAGATCGTAGAGAGAAACAGGAGAAACAAGATGAAGAACCTCTATTCCCAGCTCAACTCTCTTCTCCCATCTCATAATTCCAAGGAAGGCATACCACTGCGTGCTCAAATAGGTGAAGCAATAAAGTACATTAAAAGCCTGGAGACAAAAGTGAAGATGGCGCAGGAGAAGAAGGAAAGGTTATTGGAAAAGAAGAGAACTCTCAGTGGCTGCAGTTCCAACGCTTCTGAAGCAAAAGGAAGCCTAAACCCTCCAAAAATAGAGGTTCGTGAAACTGATTCTGCGATTCAAGTCATTCTGATATGTGGGATCGATAAAAATTTCATTTTCTGTGAAATTCTTCGGATACTGTGCGAACTGAACGTGGAAGTTGTCAATATCTATTCTACAATGAAGGGAGATTCAGCGATGCATGATGTGCACTGTAAGGTTGGGCAATTTCAATTTGCTGCTGGCAAAGTGAGTGAAATGCTAAAATGGATTGTGAATGTATCCTTCGGTGATGATGTGAAAATAGATCCTGAATTGTCAGATTATGGAATTGGCACCACTGATAACACCTGGGTGCTTCCTGATCCAACCCTAGATATTGGTTTACCACCATATCCCTGGTAA 705 0.4071 MLMVSNLRNSRANDEQQPSRNQPSSEKVERKIVERNRRNKMKNLYSQLNSLLPSHNSKEGIPLRAQIGEAIKYIKSLETKVKMAQEKKERLLEKKRTLSGCSSNASEAKGSLNPPKIEVRETDSAIQVILICGIDKNFIFCEILRILCELNVEVVNIYSTMKGDSAMHDVHCKVGQFQFAAGKVSEMLKWIVNVSFGDDVKIDPELSDYGIGTTDNTWVLPDPTLDIGLPPYPW 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01076 234 SMART finulus 31 83 IPR011598 GO:0046983
Vimu4g01076 234 FunFam Transcription factor bHLH162 19 103 - -
Vimu4g01076 234 MobiDBLite consensus disorder prediction 1 36 - -
Vimu4g01076 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 25 77 IPR011598 GO:0046983
Vimu4g01076 234 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 17 179 - -
Vimu4g01076 234 Gene3D - 16 106 IPR036638 GO:0046983
Vimu4g01076 234 Coils Coil 74 94 - -
Vimu4g01076 234 MobiDBLite consensus disorder prediction 1 23 - -
Vimu4g01076 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 24 102 IPR036638 GO:0046983
Vimu4g01076 234 Pfam Helix-loop-helix DNA-binding domain 27 78 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01076 Vimu-Chr4 9197586 9198635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01076 17 193 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 38.503 5.19e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu4g01076 HLH 2.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01076 - - var:108332856 425.631