Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01075 ATGGATCAGCAACACGAAAGTCAACCTTCTTCAACCAAAGTCGACAGAAAGATTGTAGAGAAAAACAGGCGAAGCCAAATGAAGAATCTTTATTCTGAACTCAACTCTCTTCTCCCTAGTTATGACCCCAAGTTTTTTGTTGAGCTAAATCAGCAAGTGGTGGCAGTGCCTGATCAAATAGATGAGGCGACGGAGTACATCAAGAGGCTGGAGGAAAAAGTGAAGATGGCGAAGGAGAAGAAAGAAAGGTTAATGGAAAGTAAGAGAAGTGGAAGTGGTTTTGAAACAAGAGGAAGCGAAAAGCCGCCAAAAATGGAGATTCATGTAAAGGGTTCAGTGCTTCAAGTCATTCTAACATGTGGGGTCGATAACCACTTTGTTTTCTGTGAAATTATCAGAATATTGCGTGAAGAGAATGTTGAGGTAATCAGTACCAGTTATACAATTGTTGGAGATTCAGTGATTCATGTTGTGCACGGTGAGGTTGGCCAATCTATGATCCATTCTGGAGCTAGCAAAGTGACTGAGAAGCTTAAATGGTTCTTAAACGGATCCATCCGTAATGAAGAAATGGAGCCTGGAATGTTATGGCCTTCTGAAATTGGAGCTACTCTTCCATGGGTTCTTCTAGATCCTACCCCACACAATGCCTTACAACCAAATCCTTAA 669 0.4155 MDQQHESQPSSTKVDRKIVEKNRRSQMKNLYSELNSLLPSYDPKFFVELNQQVVAVPDQIDEATEYIKRLEEKVKMAKEKKERLMESKRSGSGFETRGSEKPPKMEIHVKGSVLQVILTCGVDNHFVFCEIIRILREENVEVISTSYTIVGDSVIHVVHGEVGQSMIHSGASKVTEKLKWFLNGSIRNEEMEPGMLWPSEIGATLPWVLLDPTPHNALQPNP 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01075 222 Coils Coil 60 87 - -
Vimu4g01075 222 Gene3D - 10 93 IPR036638 GO:0046983
Vimu4g01075 222 SMART finulus 17 76 IPR011598 GO:0046983
Vimu4g01075 222 MobiDBLite consensus disorder prediction 1 20 - -
Vimu4g01075 222 Pfam Helix-loop-helix DNA-binding domain 15 41 IPR011598 GO:0046983
Vimu4g01075 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 9 87 IPR036638 GO:0046983
Vimu4g01075 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 70 IPR011598 GO:0046983
Vimu4g01075 222 MobiDBLite consensus disorder prediction 82 102 - -
Vimu4g01075 222 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01075 Vimu-Chr4 9189736 9190877 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01075 1 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 36.224 6.02e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu4g01075 HLH 9.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01075 - - gmx:100784042 254.603