Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01074 ATGGCCGATCTTCAGCAGGGAGATCAACAGTCTTCAAGGAGAGCCATGGAAAGAAAAACTATAGAAAAAAACAGGAGGATCCATATGAAGAATCTTTGTTCCCAGCTTAACTCTCTTCTCCCTAACAACAATAATCCCAGGGGTGAACCATTATCACGTGTTGATCAAATAGACGGGGCTATCAACTACATCAAGAACCTAGAGACAAAGGTGAAGATAGCAGAAAAGCACAGAGAAAGTTTAAGGGAAAGGAAGAGATCTCGTAGCGGATGTTCTAGTTCTTCTGAAACAAGGAAAGTTGAGGTTCATGAAATGGGTTCCTTGCTACGAATCACTTTGGTGTGTGACTACGAGGATCAGTTCATTTTAAGGGAAATTATTCGTATGCTTAATGAAGACAACATAGAAGTCAAGACTCTTCATTCCTCACTCACATCTGCCACCTCGTCTCTACATGTTCTCAACGCGGAGATTCAGCAATCCTATAACTTAGGAACAAGCGTTTTGATTGAGAGACTGAAAATATTTGTGAACGGACATGGGTAG 546 0.4121 MADLQQGDQQSSRRAMERKTIEKNRRIHMKNLCSQLNSLLPNNNNPRGEPLSRVDQIDGAINYIKNLETKVKIAEKHRESLRERKRSRSGCSSSSETRKVEVHEMGSLLRITLVCDYEDQFILREIIRMLNEDNIEVKTLHSSLTSATSSLHVLNAEIQQSYNLGTSVLIERLKIFVNGHG 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01074 181 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 67 IPR011598 GO:0046983
Vimu4g01074 181 SMART finulus 19 73 IPR011598 GO:0046983
Vimu4g01074 181 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 16 86 IPR036638 GO:0046983
Vimu4g01074 181 Gene3D - 5 97 IPR036638 GO:0046983
Vimu4g01074 181 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 174 - -
Vimu4g01074 181 MobiDBLite consensus disorder prediction 78 97 - -
Vimu4g01074 181 Pfam Helix-loop-helix DNA-binding domain 17 68 IPR011598 GO:0046983
Vimu4g01074 181 Coils Coil 64 84 - -
Vimu4g01074 181 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01074 Vimu-Chr4 9150833 9151675 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01074 14 179 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 33.854 2.47e-22 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu4g01074 HLH 2.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01074 - - var:108332857 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01074 4 9150833 9151675 Vimu4g01074 4 9150833 9151675 ECH
Vimu4g01074 4 9150833 9151675 Vimu5g01420 5 24950263 24951416 PCT