Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01068 ATGGCTGATCTTCAGCAGGGAGATCAACCGTCTTCAGCTATGGAAAGAAAAACTATAGAAAAAAACAGGAGAATCCATATGAAGAATCTTTGTTCCCAGCTTAACTCTCTTCTCCCTAACAACAATAATCCCAGGGGTGAACCATTATCACGTGTTGATCAAATAGACGGGGCTATCAACTACATCAAGAACCTAGAGACAAAGGTGAAGATAGCAGAAAAGCACAGAGAAAGTTTAAGGGAAAGGAAGAGATCTCGTAGCGGATGTTCTAGTTCTTCTGAAACAAGGAAAGTTGAGGTTCATGAAATGGGTTCCTTGCTACGAATCACTTTGGTGTGTGACTACGAGGATCAGTTCATTTTAAGGGAAATTATTCGTATGCTTAATGAAGACAACATAGAAGTCAAGACTCTTCATTCCTCACTCACATCTGCCACCTCGTCTCTACATGTTCTCAACGCGGAGATTCAGCAATCCTATAACTTAGGAACAAGCGTTTTGATTGAGAGACTGAAAATATTTGTGAACGGACATGGGTAG 540 0.4074 MADLQQGDQPSSAMERKTIEKNRRIHMKNLCSQLNSLLPNNNNPRGEPLSRVDQIDGAINYIKNLETKVKIAEKHRESLRERKRSRSGCSSSSETRKVEVHEMGSLLRITLVCDYEDQFILREIIRMLNEDNIEVKTLHSSLTSATSSLHVLNAEIQQSYNLGTSVLIERLKIFVNGHG 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01068 179 SMART finulus 17 71 IPR011598 GO:0046983
Vimu4g01068 179 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 17 84 IPR036638 GO:0046983
Vimu4g01068 179 Gene3D - 6 95 IPR036638 GO:0046983
Vimu4g01068 179 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 65 IPR011598 GO:0046983
Vimu4g01068 179 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 172 - -
Vimu4g01068 179 MobiDBLite consensus disorder prediction 76 95 - -
Vimu4g01068 179 Coils Coil 62 82 - -
Vimu4g01068 179 Pfam Helix-loop-helix DNA-binding domain 16 66 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01068 Vimu-Chr4 9014894 9015730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01068 11 177 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 33.679 6.68e-22 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu4g01068 HLH 2.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01068 - - var:108332857 204.912