Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01063 ATGGGTAAGTTTCTTTCTACTTTCCAGGAATTTTTGTCTCGCCGCCAGCTACCAACCAATGCCAATGTTCGGCTAAATTCAGGATTCAATGAAACTAAATCTAAATCTTCATCAAAAGTAAAGCCAAGGTCTTCTATTCTCTCTTGTTCGTTGCCACCCTCAATGTCTTCTCTTGCTTTGTTTTCTCTTGTCCTTAATTTGGTTCTTCAAGTTTTGATTTCTGTGTCTGCAAATGAATTTGTCTACAATAGGAACTTCAATTCCTCTAACGTGAAACTCTATGGAAATGCCACCATCCAGAACTCAATTCTCACGCTCACAAACAAAACTTTCTTCTCCATAGGACGTGCCTTTTACCCTCAGAAAATAAAAACGAAGCCATCCAACTCTTCCACTGTTCTTCCCTTTGCAACTTCCTTCATCTTCTCTGTTGCCCCTTGTGAGAACTTCCCTATTGCTCATGGTTTTGCTTTTCTTTTCGCGCCGGTGATGGCCGTAAATGGAGCTCTCTCGGGGAACTACTTGGGCTTGTTTAACCGCTCTACTTCAGGTAACTCCTCCAACCATGTTTTTGCGGTTGAGTTTGATGATTTTAGGAACGAGGAGTTCAATGAGGAGAATGATAATCATGTGGGCGTGGACTTGAATTCGATTATTTCGGAGTATTCTGAGCCTGCTGGGTTCTGGGGTGGGAGAGAGGGCGAGGAATGGGAGGATTTGAAACTGGCTGATGGTAGAAATTATCAGGTTTGGATTGAGTTTGAGGATTCGGTGATTAATGTTACTATGGCACCGGCAGGGAAAAAGAAGCCTCGCAGGCCTTTGATTAGTAAACCGATTAACCTTTCTTGGGTCTTGTTGGATGAAATGTATATGGGGTTTTCTGGAGCAACAGGGAGAATGGTGGACTATTGTAGAATCTTGGCTTGGAGTTTTAGCAATTCCAACTTTTCAATTGGTGATGCTTTGAACACCAAGCATTTACCCGTGTATGTGCATCCAAAAACGTCGCTGTTCAGATCAAATGGTTTCATTATAGGTGTAACTTTCGGGGCATTTTTTATGGGGGGTTTCTGTGCTTTGGTGTTTTATTATAGTTTGTTCAAAACCAGAAGGGAAGAGAAACAGGAAAATTTTGAAGACTGGGAATTGGAGTATTGGCCACACAGGATTAGCTATCAGGAGATCTGTGATGCAACAAGTGGATTCTCTGAAGAGAAAGTGATTGGGATTGGAACGAGTGGGAAAGTATACAAGGGAGTTTTGAAGGGAGTAGTAGTTGCAGTGAAGAGCATCAATCACGAGACACAGCATGGAATGAGAGAGTTTCTGGCAGAGATTTCAAGTCTTGGCAGAATGAAACACAGGAATTTAGTGGGTTTCAGAGGTTGGAGCAAAAGAAAAGGAGGAAAACTTATACTGGTTTATGATTATATGGAGAATGAGAGCTTGGACAAAAGGATCTTTGAGTGTGAAGAGGAAATGCTGCTGAGCTGGGAAGAAAGAATTAGAGTTTTGCAAAATGTAGCTGATGGGATTTTATACCTACATGAGGGTTGGGAAGTTGAGGTCTTGCATAGGGACATCAAAGCTTGTAATGTACTACTTGACAAGGACATGAATGCTAGATTGGGGGATTTTGGGCTTGCAAGGTTGCATCGCCAGGAACATGTGGCTGACACAACAAGAGTAATAGGGACTCTGGGGTACATGGCACCGGAACTAGTTCGAATTGGGCGACCCACAGCTGCGTGTGATGTGTTTAGCTTTGGAGTATTGATTCTAGAAGTGGTGTGCGGGAGAAGACCCGTCATACCAGATCAGCCACCATTGGTTGATTGGGTAGTTTCCCTTATGGAGAAAGGGGAGTTGAGTTGTGCTATTGATGAGCGTTTGAAGGGTCAAATTGGTTATAATGCTGAAGAAGCTGAGAGGATGCTTCATTTGGGTTTGTTATGTGTAGGTACTGACCCTGTTGTCAGGCCAACAATGAGACAAGTGGTGAAAACATTGGAGGGAATAAAATGCACTGTGTGCAATAAAGAGTGCATCCATTTGGGTCTGCTTGGAAAAATAAACTCAGCAGCGTCATGGTCTAAAAGTTCTACAAGTTCTTCCTATGTAAATTATCCTACCTTTGATGAGATTTTGCAGACCAAGTTTTATTCTACTGCATCTTTAAGCGTCTCTTATCCCAGCCCACAGCCACAGTCAGAGTTTGTCTCAGAAGGAAGGTGA 2238 0.4267 MGKFLSTFQEFLSRRQLPTNANVRLNSGFNETKSKSSSKVKPRSSILSCSLPPSMSSLALFSLVLNLVLQVLISVSANEFVYNRNFNSSNVKLYGNATIQNSILTLTNKTFFSIGRAFYPQKIKTKPSNSSTVLPFATSFIFSVAPCENFPIAHGFAFLFAPVMAVNGALSGNYLGLFNRSTSGNSSNHVFAVEFDDFRNEEFNEENDNHVGVDLNSIISEYSEPAGFWGGREGEEWEDLKLADGRNYQVWIEFEDSVINVTMAPAGKKKPRRPLISKPINLSWVLLDEMYMGFSGATGRMVDYCRILAWSFSNSNFSIGDALNTKHLPVYVHPKTSLFRSNGFIIGVTFGAFFMGGFCALVFYYSLFKTRREEKQENFEDWELEYWPHRISYQEICDATSGFSEEKVIGIGTSGKVYKGVLKGVVVAVKSINHETQHGMREFLAEISSLGRMKHRNLVGFRGWSKRKGGKLILVYDYMENESLDKRIFECEEEMLLSWEERIRVLQNVADGILYLHEGWEVEVLHRDIKACNVLLDKDMNARLGDFGLARLHRQEHVADTTRVIGTLGYMAPELVRIGRPTAACDVFSFGVLILEVVCGRRPVIPDQPPLVDWVVSLMEKGELSCAIDERLKGQIGYNAEEAERMLHLGLLCVGTDPVVRPTMRQVVKTLEGIKCTVCNKECIHLGLLGKINSAASWSKSSTSSSYVNYPTFDEILQTKFYSTASLSVSYPSPQPQSEFVSEGR 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01063 745 ProSitePatterns Protein kinases ATP-binding region signature. 409 430 IPR017441 GO:0005524
Vimu4g01063 745 Gene3D - 77 327 - -
Vimu4g01063 745 CDD lectin_legume_LecRK_Arcelin_ConA 79 315 IPR001220 GO:0030246
Vimu4g01063 745 Gene3D Phosphorylase Kinase; domain 1 365 478 - -
Vimu4g01063 745 SUPERFAMILY Concanavalin A-like lectins/glucanases 79 318 IPR013320 -
Vimu4g01063 745 FunFam L-type lectin-domain containing receptor kinase V.9 76 322 - -
Vimu4g01063 745 CDD STKc_IRAK 409 674 - -
Vimu4g01063 745 SUPERFAMILY Protein kinase-like (PK-like) 377 672 IPR011009 -
Vimu4g01063 745 Pfam Legume lectin domain 78 316 IPR001220 GO:0030246
Vimu4g01063 745 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 366 478 - -
Vimu4g01063 745 ProSiteProfiles Protein kinase domain profile. 403 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01063 745 ProSitePatterns Serine/Threonine protein kinases active-site signature. 524 536 IPR008271 GO:0004672|GO:0006468
Vimu4g01063 745 SMART serkin_6 403 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01063 745 FunFam L-type lectin-domain containing receptor kinase S.4 479 682 - -
Vimu4g01063 745 Pfam Protein kinase domain 404 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01063 745 PANTHER - 95 673 - -
Vimu4g01063 745 Gene3D Transferase(Phosphotransferase) domain 1 479 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01063 Vimu-Chr4 8959201 8961526 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01063 75 625 Receptor kinase-like Gene Family AT4G04960 55.216 0.0 586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu4g01063 Pkinase 1.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01063 - - vum:124844866 1287.71