Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01062 ATGTCTCCATTGAAGCTCCTTGTTATTCTTCTTCACACTGCAACCACTTTGTGTTCAGTTTCCACTACCGAATTTGTCTATAACACAAACTTCAACTCCACAAACATCATTCTATATGGAAATGCTTCTGTACAAACATCCATTCTCACTCTCACAAATTCGAGTTTCTTTTCCATAGGCCGTGCTTTTTACCCTCACAAAATACCTACCAAAAAAGCCAACTCCCCCACTTTACTCCCTTTTGCAACCTCCTTCATTTTCTCAATTGCTCCCATCAAAAACTTTATCACTGGCCATGGCTTTGTCTTCCTATTCACGCCATCAAGAGGTGTCAATGGTACCACTGCAGCAGAGTATATCGGTCTTTTCAATCTTACCAACGAAGGCAATCCTCAGAACCATGTTTTTGGAGTTGAGTTTGATATAGTACAAAATGTAGAGGAATTCAATGATATTAGTGATAATCATGTCGGTGTTGACATAAACTCGCTTCGCTCTTTGACTTCGCATGAAGCTGGTTATTGGGGAGGAAAAGGTGACAAAAAGTTTAAGGTGTTGGAGCTAAAAAATGGAGAGAACTATCAGGTATGGATTGAATTTATGCACTCTCAACTTAACGTTACTATAACTCGGGCAGGAAGAAAGAAGCCCAGAGTGCCTCTTATCAGTTGTAATGTAAGCCTTTCAGGGGTTCTAATGGATGAAACATATGTTGGATTCACTGCAGCAACAGGGAAGATAGTAGACAGTACTAGGATTCTTGCTTGGAGTTTTAGTAATTCAAATTTTTCAATAGGTGATGCTTTGGTGACAGAAAATTTGCCTTCATTTGTACATCATAAAAGGTGGTTTTCTGAAGAGCGAGTTTTGGCTGCAGGTGTGAGCATTATTTTGTGTGTGTTAATCATTGGCTCTGGTTTTGTGGTTTTTCTCATTCTGCGCAGCCGAAAGACACTAGAAGAAGTTGAGGACTGGGAACTGGAGTATTGGCCTCATAGGATTAGTTTCCATGATATTTATGCAGCAACAAGAGGGTTTTCTGAAGAGAATGTGGTTGCTGTTGGAGGGAACGGGAAGGTGTATAAAGGGGTTTTGCATGGAGCAGAAGTTGCAGTGAAGAGAATCCCTCAAGAAAGGGAAGAAGGGATGAGAGAGTTTTTGGCTGAGGTTTCAATTCTAGGCAGAATGAAGCACAAAAATTTAGTAGGATTGAGAGGTTGGTGCAAAAAAGAAAGGGGAAATTTGATTCTAGTTTATGACTTCATGAGCATGGGAAGTTTAGACAAAAGGATATTTGAGTGTGAAGAGAGAATGGTGATGGCATGGGAAGAGAGGATTCAAGTTTTGAAAAATGTAGCCACAGGGATTCTGTACCTGCATGAAGGTTGGGAAGTTAAGGTCTTGCATGGGGACATCAAAGCATGCAATGTTCTTCTTGACAAGGAGATGAATGCAAGGCTGGGAGATTTTGGATTGGCTCGTATGCATGATCATCATGGACAAGTTGTCAGCACAACAAGAGTAATTGGGACAATAGGATACATTGCTCCTGAAGTGATTCGAACAGGAACAGTGTCAACTATGTCTGATGTATTTGGTTTTGGAATCTTGGTAATGGAAGTAATTTGTGGGCGAAGATCAATTGAAGAACATAAAGCAGGTCTTATTGATTGGTTGATGTCTCTAATGGTGGAAGGCCAATTGCAAAGTGCTGTTGATGAAAGGTTGAAGGGTAAATGGGGATACAGCGCAGAGGAAGCTGAAAGATTGCTTCATTTGGGTTTGTTGTGTTCAAATTCAGACCATAGGATTCGACCAACGATGAGGCAGGTTGTGAAAATGTTGGACGGGGAAATGGACAACACTGAGGAAGAAAACATGGAGATGAGTTTGCTTGGAAAAGTAAAATCAGCTGCAATGTGGTCTAAATGTGCTTTTCCATGCAGTGGTTACCCAACATTTGATGAAATTAAGATGTTCAGTTTCAATTCTAGGACCTCTGGAAGTGGCTCAAGCACTTTTCCAGGATCAGAATCAGAAATCATCATAGTAAACAGATAA 2061 0.4056 MSPLKLLVILLHTATTLCSVSTTEFVYNTNFNSTNIILYGNASVQTSILTLTNSSFFSIGRAFYPHKIPTKKANSPTLLPFATSFIFSIAPIKNFITGHGFVFLFTPSRGVNGTTAAEYIGLFNLTNEGNPQNHVFGVEFDIVQNVEEFNDISDNHVGVDINSLRSLTSHEAGYWGGKGDKKFKVLELKNGENYQVWIEFMHSQLNVTITRAGRKKPRVPLISCNVSLSGVLMDETYVGFTAATGKIVDSTRILAWSFSNSNFSIGDALVTENLPSFVHHKRWFSEERVLAAGVSIILCVLIIGSGFVVFLILRSRKTLEEVEDWELEYWPHRISFHDIYAATRGFSEENVVAVGGNGKVYKGVLHGAEVAVKRIPQEREEGMREFLAEVSILGRMKHKNLVGLRGWCKKERGNLILVYDFMSMGSLDKRIFECEERMVMAWEERIQVLKNVATGILYLHEGWEVKVLHGDIKACNVLLDKEMNARLGDFGLARMHDHHGQVVSTTRVIGTIGYIAPEVIRTGTVSTMSDVFGFGILVMEVICGRRSIEEHKAGLIDWLMSLMVEGQLQSAVDERLKGKWGYSAEEAERLLHLGLLCSNSDHRIRPTMRQVVKMLDGEMDNTEEENMEMSLLGKVKSAAMWSKCAFPCSGYPTFDEIKMFSFNSRTSGSGSSTFPGSESEIIIVNR 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01062 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Vimu4g01062 686 Pfam Protein kinase domain 350 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01062 686 CDD STKc_IRAK 355 617 - -
Vimu4g01062 686 Gene3D - 21 266 - -
Vimu4g01062 686 FunFam L-type lectin-domain containing receptor kinase S.4 422 628 - -
Vimu4g01062 686 PANTHER - 40 619 - -
Vimu4g01062 686 Gene3D Phosphorylase Kinase; domain 1 312 421 - -
Vimu4g01062 686 ProSiteProfiles Protein kinase domain profile. 346 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01062 686 SMART serkin_6 346 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01062 686 SUPERFAMILY Protein kinase-like (PK-like) 321 615 IPR011009 -
Vimu4g01062 686 FunFam L-type lectin-domain containing receptor kinase S.4 21 266 - -
Vimu4g01062 686 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 261 IPR013320 -
Vimu4g01062 686 Pfam Legume lectin domain 23 262 IPR001220 GO:0030246
Vimu4g01062 686 Gene3D Transferase(Phosphotransferase) domain 1 422 638 - -
Vimu4g01062 686 FunFam Putative L-type lectin-domain containing receptor kinase VII.2 308 421 - -
Vimu4g01062 686 CDD lectin_legume_LecRK_Arcelin_ConA 23 261 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01062 Vimu-Chr4 8955516 8957576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01062 20 563 Receptor kinase-like Gene Family AT4G04960 55.072 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu4g01062 Pkinase 1.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01062 - - gmx:100804553 1140.95