Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01061 ATGGGGTGCATAGCTTCCAAGAGTGCAGCTGTTGATGACAGCAGGGAGGGTGTGGCGAGGGAATTGACTTCATCTAGCAGAAGGACGTCTGAGATGAAGGTTTCTGCATTGGGTTCCAAGAAAAGGGTCGATGGAGTTTGGGGGAAAGATAAGGTTTTAGATGGTGCTGATATGAAAGTTTCACTAATTGGCAAGGAATCTGATGGTTCGATGCGCTTGTTTGATTATCAGAATGGGAAGAAGAAAAAGGAGAAACCTGAATCGGCTGTTCTTGATCATCCTGGTCTTGGAAGGCTTCCGAAGGGTTTAGAAGGAGAGCAAGTTGCAGCAGGTTGGCCAACTTGGCTTTCTTCTGTTGCTGGTGAAGCTATCCAAGGGTGGATACCACGGAGGGCAGATACTTTTGAGAGGTTTGGTAAAATTGGCCAAGGAACCTATAGTTCTGTGTACAAGGCACGTGATTTGACTCACCAAAAGATCGTTGCATTGAAGAGGGTGCGCTTTGATAATTTCGATGCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCTTGTTCTGCGTAGGCTTGACCATCCAAATATAATAAAGTTGGAAGGATTGATAACGTCGCAGACATCTCGCAGCTTGTACCTTGTTTTTGAATACATGGAACATGATCTTACAGGACTTGCATCAAGTCCTACCATTAAGTTTTCCGAACCACAGGTTAAATGCTATATGCAGCAGCTTCTTAGTGGATTGAATCATTGTCATAGTCGAGGTGTCCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGACAACAATGGCACCTTAAAGATTGCAGATTTTGGTCTGGCAAATTTTATTGACCCCCATCACAAGGTTCCATTGACCAGCCGTGTAGTAACTCTGTGGTATAGACCACCGGAACTCTTACTAGGAGCATCTAATTACGGAGTTGAAGTAGATTTGTGGAGCACTGGTTGCATACTGGGGGAATTATATTGTGGCAGGCCTATTTTGCCTGGAAAAACAGAGGTCGAGCAATTGCATAGGATTTTTAAACTTTGTGGCTCACCATCTGAGGACTACTGGCGTAAGCTGCGGTCACCACATTCAACAGTATTCAGGCCTCCCCACCATTATAGACGTTGTGTTGCTGAAACATTTAAAGAATATCCATCTGCTGCCACAAAGCTCATCGAATCCCTACTTGCTTTAGATCCCACACTTCGAGGAACAGCGGCTACAGCCCTGAAGAGTGAGTTCTTTTCAACGGAACCTCTTCCCTGCGATCCATCAAGTTTACCAAAATATCCTCCCTGCAAAGAGATGGACACTAAATTTTGGGAAGAAGCAACAAGGCAAGGAGCTGATGGGAGAAAGGAGAAGAAAAATGGACCAAGAGTTCGGCAAGAAAAAGAACCTCAGACATTTATTTTATCCAAAGACAATGAAGACTGTCACATTTCAATGCAGCAAGGGCAACGCCTTCCTAACTCAAGGAGCCGGAACGAATTCTTCAACCCTCACAGAGAACCGGTTTCTGGACATTTGGTTTTTCCACAGAAAGTGTCAGAGGATCATAAATCAACAGTAAATTATTTCTCCGGGCCTCTTTATCAGAGGCCTATGCATTCAGGTCCATTGGTTCCAGGCAATGGCTGGGTAATGGCTGGAAAGGAAGCTGGTGAGCAGCCTCATGTTTCAAACAAAGCCACCCTACCAAAACTATCTGGAGTGGCATCTAGGACTTCATTGTCCGGAGATAAAAAGGAAAACCCTGTTTCTTCAGGGCCCCGAGAATCAATTCAAGCTCAAAGATCTTTGGAGTCAACTAATGCTGGATCAGAGTCAAGACGAAGGCATGATAAGAAACGCCATTCTCAGAGAATTGATCACAGGCAAATCGAAAACGCGAGAGTCTCGACTCAAACATTAATTCAGGAGGGCCATGGACCGATGGGAAACAATATCTGCCACCTCTCTGGTCCATTACTGGTTTCATCAAACAATGTGGATCAGATGCTCAAAGAGCGTGATCGAAAGATCCAAGAATATTCGAGACGAGCACGAATGAACAAGTCAGGTGAGATAGCTCGTGCAAACCAAAATTAG 2103 0.447 MGCIASKSAAVDDSREGVARELTSSSRRTSEMKVSALGSKKRVDGVWGKDKVLDGADMKVSLIGKESDGSMRLFDYQNGKKKKEKPESAVLDHPGLGRLPKGLEGEQVAAGWPTWLSSVAGEAIQGWIPRRADTFERFGKIGQGTYSSVYKARDLTHQKIVALKRVRFDNFDAESVKFMAREILVLRRLDHPNIIKLEGLITSQTSRSLYLVFEYMEHDLTGLASSPTIKFSEPQVKCYMQQLLSGLNHCHSRGVLHRDIKGSNLLIDNNGTLKIADFGLANFIDPHHKVPLTSRVVTLWYRPPELLLGASNYGVEVDLWSTGCILGELYCGRPILPGKTEVEQLHRIFKLCGSPSEDYWRKLRSPHSTVFRPPHHYRRCVAETFKEYPSAATKLIESLLALDPTLRGTAATALKSEFFSTEPLPCDPSSLPKYPPCKEMDTKFWEEATRQGADGRKEKKNGPRVRQEKEPQTFILSKDNEDCHISMQQGQRLPNSRSRNEFFNPHREPVSGHLVFPQKVSEDHKSTVNYFSGPLYQRPMHSGPLVPGNGWVMAGKEAGEQPHVSNKATLPKLSGVASRTSLSGDKKENPVSSGPRESIQAQRSLESTNAGSESRRRHDKKRHSQRIDHRQIENARVSTQTLIQEGHGPMGNNICHLSGPLLVSSNNVDQMLKERDRKIQEYSRRARMNKSGEIARANQN 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01061 700 MobiDBLite consensus disorder prediction 565 634 - -
Vimu4g01061 700 Gene3D Transferase(Phosphotransferase) domain 1 218 458 - -
Vimu4g01061 700 MobiDBLite consensus disorder prediction 449 471 - -
Vimu4g01061 700 PANTHER CELL DIVISION PROTEIN KINASE 133 425 - -
Vimu4g01061 700 SUPERFAMILY Protein kinase-like (PK-like) 128 427 IPR011009 -
Vimu4g01061 700 MobiDBLite consensus disorder prediction 567 609 - -
Vimu4g01061 700 FunFam probable serine/threonine-protein kinase At1g54610 122 217 - -
Vimu4g01061 700 CDD STKc_CDK9_like 135 419 - -
Vimu4g01061 700 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01061 700 FunFam probable serine/threonine-protein kinase At1g54610 218 459 - -
Vimu4g01061 700 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01061 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Vimu4g01061 700 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01061 700 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Vimu4g01061 700 Gene3D Phosphorylase Kinase; domain 1 122 217 - -
Vimu4g01061 700 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01061 Vimu-Chr4 8944545 8949319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01061 127 460 Core Cell Cycle Gene Families AT5G10270 48.857 7.03e-110 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vimu4g01061 Pkinase 1.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01061 - K08819 gmx:100781209 1204.12