Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01060 ATGATTATTACCTTATATATTCTTGCAGCTATTCAAGGAGATAACTTTGTGGGCATGAACATGGGATTTGAGAACTCTGCTGGAGCTGAGAAGCATCAGGCAGTGGCATTGAGAGTTCAAGCAGACAAGTCTGTGTTCTTCAACTGTTCAATGGATGGGTATCAAGACACACTTTACGTACACACCCTGCGTCAGTATTATAGGGATTGCACCATTTCTGGTACCATCGACTTTGTGTTCGGAAATGCACTTGCTGTTTTCCAGAATTGCACTTTTGTGGTCCGAAAGCCAATGGAAAATCAACAATGCATTGTGACTGCACAAGGTAGAAAAGAGAAAGAACAACCATCTGCAATAGTGATCCAAGGAGGTTCCATTGTGGCTGATCCTGAGTTTTACCCAGTAAGATTTGTTAACAAAGCTTACCTAGCTCGTCCATGGAAGACATACTCTAGGACCATTTTCATGGATACATACATCGATGACTTGATTCAAGGTGAAGGGTATTTGGCATGGCAAGCATTAGAAGGACCCACTGGTATGGATACTTGCTTTTATGCAGAGTATCACAACACTGGCCCTGGTTCAGATAAATCCAAGCGTGTGAATTGGAATGGGATTTTGAACCTCAACTCCAAAGCTGCACGTTTGTTCGCACCTTCCAAGTTCTTTCATGGACTTGATTGGGTTCGGGCTACTGGGGTTCCTTGCTTCCCTACCGTGCCCCCACACTACAGGCACAAGAAAACCATATTACCCTGGTGA 765 0.4392 MIITLYILAAIQGDNFVGMNMGFENSAGAEKHQAVALRVQADKSVFFNCSMDGYQDTLYVHTLRQYYRDCTISGTIDFVFGNALAVFQNCTFVVRKPMENQQCIVTAQGRKEKEQPSAIVIQGGSIVADPEFYPVRFVNKAYLARPWKTYSRTIFMDTYIDDLIQGEGYLAWQALEGPTGMDTCFYAEYHNTGPGSDKSKRVNWNGILNLNSKAARLFAPSKFFHGLDWVRATGVPCFPTVPPHYRHKKTILPW 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01060 254 ProSitePatterns Pectinesterase signature 2. 72 81 IPR033131 -
Vimu4g01060 254 Pfam Pectinesterase 10 226 IPR000070 GO:0030599|GO:0042545
Vimu4g01060 254 PANTHER PECTINESTERASE 10 231 - -
Vimu4g01060 254 Gene3D - 5 240 IPR012334 -
Vimu4g01060 254 FunFam Pectinesterase 4 4 241 - -
Vimu4g01060 254 SUPERFAMILY Pectin lyase-like 10 238 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01060 Vimu-Chr4 8941053 8941817 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01060 5 236 Carbohydrate Esterase AT5G49180 53.448 2.88e-91 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01060 K01051 - gmx:100803527 446.432