Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01059 ATGATAGAGGAGCTATACATACTTGAAATGTCGGAGAGAAATGTTGATAAGGGAAAAAGGATCATCATCGGTGTTTCAACCTTGTTCTTGGTGGCTGTAGTTGGAGTTATCGTATTTGGTATCAACCTCGCTGAGAGTGGTTCAAATGGAAATGGTGATAAAGAGAATGTTAATAACAAAAAGGAACATGTTACTGCCTCTGTAAAAGCCGTTCAAACCCTTTGTAACCCTACGAATTACAAGGAAGAATGTGAAGAAAATCTCATGGCAGGTGTCGGAGACAGCACAACAACAGATCCATATGAACTTATCAAACTTGCTTTCAATATCACCATGGAAAAAATTACTGATAAATTCGAAGAAATGAATATCTTGCATGACATTGAGAAGGAGCCTAGAGCCAAGATGGCACTGGAAACATGCAAACAACTCATGGATCTTTCGGTTTCGGAGTTAGAAAGGTCATTTATTGGAATGAACGAGTTTAGCCTGATGAATGTTGATAAAATCCTTATGAACTTAAAAGTTTGGCTAAGTGGTGCACTTACATACCAAGACACTTGCTTGGATCAGTTTGAGAACACCACCAGCGATGCTGGTAAAAAGATGCAGGATTTATTAACGACAGGCATGCATATGACTAGCAATGGTCTTTCCATCATAACAGCATTGTCTGATACTTTCACAAATTTCAATGCCACAAAATTACTGGGACGTCGCCTCCTTCAAGATTCTGAGTCACCATCATCGGTTCATAATGGAGGACTAAATGAAACTTTGTTATTAAATCGTAAGCCTAATGTGACTGTAGCCAAAGATGGCAGTGGAGATTTCAGAACCATCAATGAAGCACTGAACAAAGTGCCCGAGAAAAATAAAACACCATTTGTGATCTACATCAAGGAAGGCATCTATCAAGAGTATGTTGAAGTGAAAAAGAATATGACTCATGTGGTTTTCATTGGTGATGGTGGAAAAAAGACAAGAATAACAGGCAATAAAAACTACATTGATGGAATCACCACTTATAAAACTGCTACAGTTGGTATGTCTTCTTTCATGTTCCTTTTCAATATCTTTGTTTAA 1086 0.3785 MIEELYILEMSERNVDKGKRIIIGVSTLFLVAVVGVIVFGINLAESGSNGNGDKENVNNKKEHVTASVKAVQTLCNPTNYKEECEENLMAGVGDSTTTDPYELIKLAFNITMEKITDKFEEMNILHDIEKEPRAKMALETCKQLMDLSVSELERSFIGMNEFSLMNVDKILMNLKVWLSGALTYQDTCLDQFENTTSDAGKKMQDLLTTGMHMTSNGLSIITALSDTFTNFNATKLLGRRLLQDSESPSSVHNGGLNETLLLNRKPNVTVAKDGSGDFRTINEALNKVPEKNKTPFVIYIKEGIYQEYVEVKKNMTHVVFIGDGGKKTRITGNKNYIDGITTYKTATVGMSSFMFLFNIFV 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01059 361 Pfam Pectinesterase 267 356 IPR000070 GO:0030599|GO:0042545
Vimu4g01059 361 Pfam Plant invertase/pectin methylesterase inhibitor 70 220 IPR006501 GO:0004857
Vimu4g01059 361 CDD PMEI-like_3 73 225 - -
Vimu4g01059 361 Gene3D Invertase/pectin methylesterase inhibitor family protein 66 226 IPR035513 -
Vimu4g01059 361 SMART PMEI_2 66 220 IPR006501 GO:0004857
Vimu4g01059 361 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 225 IPR035513 -
Vimu4g01059 361 Gene3D - 262 358 IPR012334 -
Vimu4g01059 361 SUPERFAMILY Pectin lyase-like 265 352 IPR011050 -
Vimu4g01059 361 PANTHER PECTINESTERASE 26 355 - -
Vimu4g01059 361 FunFam Pectinesterase 67 225 - -
Vimu4g01059 361 NCBIfam pectinesterase inhibitor domain 66 224 IPR006501 GO:0004857
Vimu4g01059 361 ProSitePatterns Pectinesterase signature 1. 292 311 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01059 Vimu-Chr4 8939851 8940936 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01059 17 356 Carbohydrate Esterase AT3G05610 41.860 8.48e-90 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01059 K01051 - gmx:100815272 463.381