LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu4g01059	ATGATAGAGGAGCTATACATACTTGAAATGTCGGAGAGAAATGTTGATAAGGGAAAAAGGATCATCATCGGTGTTTCAACCTTGTTCTTGGTGGCTGTAGTTGGAGTTATCGTATTTGGTATCAACCTCGCTGAGAGTGGTTCAAATGGAAATGGTGATAAAGAGAATGTTAATAACAAAAAGGAACATGTTACTGCCTCTGTAAAAGCCGTTCAAACCCTTTGTAACCCTACGAATTACAAGGAAGAATGTGAAGAAAATCTCATGGCAGGTGTCGGAGACAGCACAACAACAGATCCATATGAACTTATCAAACTTGCTTTCAATATCACCATGGAAAAAATTACTGATAAATTCGAAGAAATGAATATCTTGCATGACATTGAGAAGGAGCCTAGAGCCAAGATGGCACTGGAAACATGCAAACAACTCATGGATCTTTCGGTTTCGGAGTTAGAAAGGTCATTTATTGGAATGAACGAGTTTAGCCTGATGAATGTTGATAAAATCCTTATGAACTTAAAAGTTTGGCTAAGTGGTGCACTTACATACCAAGACACTTGCTTGGATCAGTTTGAGAACACCACCAGCGATGCTGGTAAAAAGATGCAGGATTTATTAACGACAGGCATGCATATGACTAGCAATGGTCTTTCCATCATAACAGCATTGTCTGATACTTTCACAAATTTCAATGCCACAAAATTACTGGGACGTCGCCTCCTTCAAGATTCTGAGTCACCATCATCGGTTCATAATGGAGGACTAAATGAAACTTTGTTATTAAATCGTAAGCCTAATGTGACTGTAGCCAAAGATGGCAGTGGAGATTTCAGAACCATCAATGAAGCACTGAACAAAGTGCCCGAGAAAAATAAAACACCATTTGTGATCTACATCAAGGAAGGCATCTATCAAGAGTATGTTGAAGTGAAAAAGAATATGACTCATGTGGTTTTCATTGGTGATGGTGGAAAAAAGACAAGAATAACAGGCAATAAAAACTACATTGATGGAATCACCACTTATAAAACTGCTACAGTTGGTATGTCTTCTTTCATGTTCCTTTTCAATATCTTTGTTTAA	1086	0.3785	MIEELYILEMSERNVDKGKRIIIGVSTLFLVAVVGVIVFGINLAESGSNGNGDKENVNNKKEHVTASVKAVQTLCNPTNYKEECEENLMAGVGDSTTTDPYELIKLAFNITMEKITDKFEEMNILHDIEKEPRAKMALETCKQLMDLSVSELERSFIGMNEFSLMNVDKILMNLKVWLSGALTYQDTCLDQFENTTSDAGKKMQDLLTTGMHMTSNGLSIITALSDTFTNFNATKLLGRRLLQDSESPSSVHNGGLNETLLLNRKPNVTVAKDGSGDFRTINEALNKVPEKNKTPFVIYIKEGIYQEYVEVKKNMTHVVFIGDGGKKTRITGNKNYIDGITTYKTATVGMSSFMFLFNIFV	361

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu4g01059	361	Pfam	Pectinesterase	267	356	IPR000070	GO:0030599\|GO:0042545
	Vimu4g01059	361	Pfam	Plant invertase/pectin methylesterase inhibitor	70	220	IPR006501	GO:0004857
	Vimu4g01059	361	CDD	PMEI-like_3	73	225	-	-
	Vimu4g01059	361	Gene3D	Invertase/pectin methylesterase inhibitor family protein	66	226	IPR035513	-
	Vimu4g01059	361	SMART	PMEI_2	66	220	IPR006501	GO:0004857
	Vimu4g01059	361	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	70	225	IPR035513	-
	Vimu4g01059	361	Gene3D	-	262	358	IPR012334	-
	Vimu4g01059	361	SUPERFAMILY	Pectin lyase-like	265	352	IPR011050	-
	Vimu4g01059	361	PANTHER	PECTINESTERASE	26	355	-	-
	Vimu4g01059	361	FunFam	Pectinesterase	67	225	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu4g01059	Vimu-Chr4	8939851	8940936	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu4g01059	17	356	Carbohydrate Esterase	AT3G05610	41.860	8.48e-90	281

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu4g01059	K01051		-	gmx:100815272	463.381

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