Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu4g01052 | ATGGCCTTAAACCAGTATTTTGAGGACGTTGTGCCCCAGTTGGATTCCTTTGAAGATATATCATCTCTGAAAACATGGAAATGTGCCGGTGAAGATGATATTGCAGATTCGGAGAAAAAAGCCTCCAGTGGCTTTGATTGCAACATCTGCCTGGAGTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGTCACCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAACTTCCAAAGTACCTCCTCAGAAAATGAAGAGAAGCAACAATGTCCAGTGTGCAAATCAGAAATCTCACAGTCATCACTTGTTCCATTATATGGCCGTGACCAAACCACACTACCTTCCAAAAGCAAAGGTCACCAAGTAGGCATTGTTATACCAAGAAGACCCCTTGGTCCTTCATGTCTGACCAACTCATCAAGATCACGTGATTCTGAAACTGTTTCCCGACATACTTCACATGTTTATCACCGCCATTATCCCAATCATCCTCAACAATTCAACTCAATTCCTGGCAGTTACCCTTCATCAATGTTCAACACTGCATACGGAGTCTTTGGAGAGATGATATATGCAAGGGTCTTTGGAAACCAAATGACTAACATCTATTCATATGATCTTTCAGGGAACAGTAATCCAAGGGTCATAAGGCACTTAATGCAAGTTGATAGGTCACTCAATAGAATCACATTTTTCCTCCTTTGTTGCGTAGTTTTGTGTCTACTCTTATTCTGA | 735 | 0.4204 | MALNQYFEDVVPQLDSFEDISSLKTWKCAGEDDIADSEKKASSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFQSTSSENEEKQQCPVCKSEISQSSLVPLYGRDQTTLPSKSKGHQVGIVIPRRPLGPSCLTNSSRSRDSETVSRHTSHVYHRHYPNHPQQFNSIPGSYPSSMFNTAYGVFGEMIYARVFGNQMTNIYSYDLSGNSNPRVIRHLMQVDRSLNRITFFLLCCVVLCLLLF | 244 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu4g01052 | 244 | SMART | ring_2 | 47 | 93 | IPR001841 | - | |
Vimu4g01052 | 244 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 20 | 241 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Vimu4g01052 | 244 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 28 | 107 | IPR013083 | - | |
Vimu4g01052 | 244 | ProSitePatterns | Zinc finger RING-type signature. | 62 | 71 | IPR017907 | - | |
Vimu4g01052 | 244 | SUPERFAMILY | RING/U-box | 46 | 100 | - | - | |
Vimu4g01052 | 244 | ProSiteProfiles | Zinc finger RING-type profile. | 47 | 94 | IPR001841 | - | |
Vimu4g01052 | 244 | FunFam | E3 ubiquitin-protein ligase RMA1H1 isoform A | 30 | 107 | - | - | |
Vimu4g01052 | 244 | Pfam | Zinc finger, C3HC4 type (RING finger) | 47 | 93 | IPR018957 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu4g01052 | Vimu-Chr4 | 8863720 | 8864484 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu4g01052 | 31 | 244 | C3H Transcription Factor Family | AT4G28270 | 38.288 | 1.72e-41 | 139 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu4g01052 | K10666 | - | gmx:100785491 | 373.244 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu4g01052 | 4 | 8863720 | 8864484 | Vimu4g01052 | 4 | 8863720 | 8864484 | ECH |