Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01052 ATGGCCTTAAACCAGTATTTTGAGGACGTTGTGCCCCAGTTGGATTCCTTTGAAGATATATCATCTCTGAAAACATGGAAATGTGCCGGTGAAGATGATATTGCAGATTCGGAGAAAAAAGCCTCCAGTGGCTTTGATTGCAACATCTGCCTGGAGTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGTCACCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAACTTCCAAAGTACCTCCTCAGAAAATGAAGAGAAGCAACAATGTCCAGTGTGCAAATCAGAAATCTCACAGTCATCACTTGTTCCATTATATGGCCGTGACCAAACCACACTACCTTCCAAAAGCAAAGGTCACCAAGTAGGCATTGTTATACCAAGAAGACCCCTTGGTCCTTCATGTCTGACCAACTCATCAAGATCACGTGATTCTGAAACTGTTTCCCGACATACTTCACATGTTTATCACCGCCATTATCCCAATCATCCTCAACAATTCAACTCAATTCCTGGCAGTTACCCTTCATCAATGTTCAACACTGCATACGGAGTCTTTGGAGAGATGATATATGCAAGGGTCTTTGGAAACCAAATGACTAACATCTATTCATATGATCTTTCAGGGAACAGTAATCCAAGGGTCATAAGGCACTTAATGCAAGTTGATAGGTCACTCAATAGAATCACATTTTTCCTCCTTTGTTGCGTAGTTTTGTGTCTACTCTTATTCTGA 735 0.4204 MALNQYFEDVVPQLDSFEDISSLKTWKCAGEDDIADSEKKASSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFQSTSSENEEKQQCPVCKSEISQSSLVPLYGRDQTTLPSKSKGHQVGIVIPRRPLGPSCLTNSSRSRDSETVSRHTSHVYHRHYPNHPQQFNSIPGSYPSSMFNTAYGVFGEMIYARVFGNQMTNIYSYDLSGNSNPRVIRHLMQVDRSLNRITFFLLCCVVLCLLLF 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01052 244 SMART ring_2 47 93 IPR001841 -
Vimu4g01052 244 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 20 241 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vimu4g01052 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 107 IPR013083 -
Vimu4g01052 244 ProSitePatterns Zinc finger RING-type signature. 62 71 IPR017907 -
Vimu4g01052 244 SUPERFAMILY RING/U-box 46 100 - -
Vimu4g01052 244 ProSiteProfiles Zinc finger RING-type profile. 47 94 IPR001841 -
Vimu4g01052 244 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 30 107 - -
Vimu4g01052 244 Pfam Zinc finger, C3HC4 type (RING finger) 47 93 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01052 Vimu-Chr4 8863720 8864484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01052 31 244 C3H Transcription Factor Family AT4G28270 38.288 1.72e-41 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01052 K10666 - gmx:100785491 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01052 4 8863720 8864484 Vimu4g01052 4 8863720 8864484 ECH